Burkholderia oklahomensis EO147: DM82_1929
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Entry
DM82_1929 CDS
T03284
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bok
Burkholderia oklahomensis EO147
Brite
KEGG Orthology (KO) [BR:
bok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bok03019
]
DM82_1929 (hrpA)
Enzymes [BR:
bok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DM82_1929 (hrpA)
Messenger RNA biogenesis [BR:
bok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DM82_1929 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_23
NACHT
AAA_19
T2SSE
nSTAND3
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AIO64845
UniProt:
A0AAI8FLK2
LinkDB
All DBs
Position
1:complement(2234943..2239070)
Genome browser
AA seq
1375 aa
AA seq
DB search
MSNVPKSPAQKRAGTPGEPRPAGAGAGRPPRPPRTAPAQERAPRAERRESVPQAARPPRA
RVAPNPVPPITFPESLPVSGRRDEIARAIADHPVVIVCGETGSGKTTQLPKICLALGRGV
GAGGAGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMTDGI
LLAETQTDPLLTAYDTLIIDEAHERSLNIDFLLGYLKQILPKRPDLKLIVTSATIDADRF
ARHFGSDERPAPVIEVSGRLYPVEVRYRPIADDRPAAVRHAEGAASGRDRAKTAREAERD
LMDGIVDAVDELCREGPGDVLVFLAGEREIRDAAEALRKHHPPHTEILPLFARLSAAEQE
RVFKPSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIESISQAAA
NQRAGRCGRVADGICIRLYEESDFAARVRFTDPEILRSSLASVILRMKSLHLSAIESFPF
IEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQQALREM
LVIASALSVQDPRDRPLDAQEQADQAHRRFADERSEFLQWLKIWAWFEEAVAHKKSNRQL
VDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRLNEADATFEQIHLSLLTGLLGNIGFK
ADDEPHYLGARGIKFHLWPGSALVKKAGRWVMAAELVETSRLYARCIAKIEPEWIERIGA
HLLKKSLSEPHWEKRPAQVSAFERATLYGLTIYHRRRVAFGRQDPARARELFIRGALVGG
AFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVDDELIYAFYDQTVPAGIHTGVAFERWY
RDEVKKSGQPEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRATMAGVEMALSYHFEPGAPR
DGVTLAVPLFALNQVDARRAEWLVPGMLKEKVQLLLKSLPQKLRRHCVPLPEYAAGFVER
VGAERFGAGGLVEGLIADIRGETQIATKTSDFKLETLPAHLFMNFKVIDEHGRQLAMGRN
LAQLRAELGAQAQQHFQKIAAAATLAPAGEGMGMATAAATAGARPGAHGGASPRAAAQSA
AQAGAAEAGATALYENLTTWNFGKLPELLEIRRRGETLFGYPALVDRGAHCDVEVFDSPE
EAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAMQYMSVGTQDELRDQLIATALDRA
CLQDPLPADDASFHARRDEGRSRLNLLAQEIARLVGQILAEYAGLAKKLAQAKPFPAAHA
DMQGQLAALVGKRFVVDTPYAQLAHFPRYLKGIALRIDKLKADPARDARQFAELQPLAQH
YQRAVAQRGGVADARLAEFRWLLEELRISLFAQELRTPMPVSVKRLHKVWESMQR
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcgcaaaaacgtgcgggcacgccgggcgagccgcgg
cccgcgggggcgggggcgggccggccgccgcgtccgccgcggacggcgcccgcgcaggag
cgcgcgccgcgcgccgagcgccgcgaatccgtcccccaggccgcccggccgccgcgtgcg
cgcgtcgcgccgaatcccgttccgccgatcacgtttcccgagagcctgcccgtatcgggc
cggcgcgacgagatcgcgcgcgcgatcgccgatcacccggtcgtgatcgtctgcggcgag
acgggctcgggcaagacgacccagctcccgaagatctgcctcgcgctcggccgcggcgtc
ggcgcgggcggcgcgggcctgatcggccacacgcagccgcggcggctcgcggcgtcgtcg
acggggcgccgcatcgccgaggaactcggcacgccgttcggcgaagtggtcggctacaag
gtgcggttcaccgacaacctcgcgccgggcgcgtccgtcaagctgatgacggacggcatc
ctgctcgccgagacgcagaccgatccgctcctcacggcgtacgacacgctgatcatcgac
gaggcgcatgagcgcagcctcaacatcgacttcctgctcggctatctgaagcagatcctg
ccgaagcggccggacctgaagctgatcgtcacgtcggcgacgatcgacgccgatcgcttc
gcgcgccatttcggcagcgacgagcggcccgcgcccgtgatcgaggtgagcgggcggctg
tatccggtcgaagtccgctaccggccgatcgccgacgaccggccggccgccgtgcggcac
gcggagggcgcggcgtccggccgcgaccgcgcgaagaccgcgcgcgaggcggagcgcgac
ctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgaaggcccgggcgacgtg
ctcgtgttcctggccggcgagcgcgagatccgcgacgcggccgaggcgctgcgcaagcac
catccgccgcacaccgaaatcctgccgctgttcgcgcggctgtcggcggccgagcaggag
cgcgtgttcaagccgtcgaacgcgcgccggatcgtgctcgcgacgaacgtcgccgagacg
tcgctcacggtgccgggcatccgctacgtcgtcgatacgggcttggcgcgcgtgaagcgc
tattcgtatcggaacaaggtcgagcagttgcagatcgagtcgatctcgcaggcggccgcg
aaccagcgcgcgggccgctgcggccgcgtcgccgacggcatctgcatccgtctctatgaa
gagagcgacttcgccgctcgcgtgcgcttcaccgatccggaaatcctgcgctcgtcgctc
gcgtcggtgatcctgcggatgaagtcgctgcatctgtcggcgatcgagtcgtttccgttc
atcgagccgccgcccggccgcgcgatcgcggacggctaccagttgctgaacgagctcggc
gcggtcgacgacgacaacgcgctcaccccgctcggccgcgagctcgcgcggctgccgctc
gatccgcgcgtcggccggatgattctcgccgcgcgcgaccagcaggcattgcgggaaatg
ctcgtgatcgcgagcgcgctgtccgtgcaggacccgcgcgatcgcccgctcgacgcgcag
gagcaggccgaccaggcgcaccggcgcttcgccgacgagcgctccgaattcctccagtgg
ctgaagatctgggcgtggttcgaggaggcggtcgcgcacaagaagtcgaaccggcagctc
gtcgacgcgtgccggcagaacttcctgtcgcatctgcggctgcgcgaatggcgcgacgtc
cactcgcagcttctgaccgtcgtgcgcgagcacggctggcggctcaacgaggccgatgcg
acgttcgagcagatccacctgtcgctcttgacgggccttctcggcaacatcggcttcaag
gccgacgacgagccgcactacctcggcgcgcgcgggatcaagttccatctgtggccgggc
tccgcgctcgtgaagaaggcgggacgctgggtgatggcggccgagctcgtcgagacgagc
cggctgtacgcgcgttgcatcgcgaagatcgagccggaatggatcgagcggatcggcgcg
cacctgctgaagaagtcgctgtcggagccgcactgggagaagcgccccgcgcaggtttcc
gcgttcgagcgcgcgacgctgtacgggctcaccatctatcaccggcggcgcgtcgcgttc
ggccggcaggatccggcgcgggcgcgcgagctgttcatccgcggcgcgctcgtcggcggc
gcgttcgacacgaagctcgcgttcttcgcgcacaaccgcaagctgctcgccgacatcgag
cagctcgagcacaagtcgcgccggcaggacgtgctcgtcgacgacgagctgatctacgcg
ttctacgatcagacggttccggcgggcatccacacgggcgtcgcgttcgagcgctggtat
cgcgacgaggtgaagaagagcggccagccggaagacaagctgcgcctgctgtatctgtcg
cgcgacgacctgatgcgccacgaggcggccggcgtgacgaccgacctgttcccgaagcgc
gcgacgatggcgggcgtcgagatggcgctgtcctatcacttcgagcccggcgcgccgcgc
gacggcgtgacgctcgcggtgccgctcttcgcgctgaaccaggtcgacgcgcgccgcgcc
gagtggctcgtgccggggatgctgaaggagaaggtgcagctgttgctgaagtcgctgccg
cagaagctgcgccgccactgcgtgccgctgcccgagtatgcggcgggcttcgtcgagcgc
gtgggcgccgagcgcttcggcgcgggcggcctcgtcgaggggctgatcgccgacatccgc
ggagagacgcagatcgcgacgaagacatccgatttcaagctcgagacgctgcccgcgcac
ctgttcatgaacttcaaggtgatcgacgagcacggccggcagctcgcgatggggcgcaat
ctcgcgcaactgcgtgcggagctgggcgcgcaggcgcagcagcacttccagaagatcgcc
gccgccgcgacgctggcgccggcgggcgagggcatgggcatggccacggcggcggcgact
gccggcgcacggccgggcgcgcacggcggcgcgtcgccgcgcgccgccgcgcaatccgcg
gcgcaagcgggggcggccgaagccggcgcgaccgcgctctacgagaatctgacgacctgg
aatttcggcaagctgcccgagctgctcgagatccgccggcgcggcgagacgctgttcggc
tatccggcgctcgtcgatcgcggcgcgcattgcgacgtcgaagtgttcgattcgcccgag
gaagcggcgcggatccaccgcgcgggcctcaggcgcctgttcgcgctgcagttgaaggag
ccgatcaaatatctggagaagaacctgccggggctgcgcgagatggcgatgcagtacatg
tcggtcggcacgcaggacgagttgcgcgaccagctgatcgcgacggcgctcgaccgcgcg
tgcctgcaggacccgctgcccgccgacgacgcgagcttccacgcgcgccgcgacgagggc
aggagccgcctcaacctgctcgcgcaggagattgcgcggctcgtcgggcagatcctcgcc
gaatacgcggggctcgcgaagaagctcgcgcaggcgaaaccgtttccggccgcgcacgcg
gacatgcagggccagctcgcggcgctcgtcggcaagcgcttcgtcgtcgacacgccttac
gcgcagcttgcgcacttcccgcgctacctgaaggggatcgcgctgcggatcgacaagctg
aaggccgatcccgcgcgcgacgcgcgccagttcgccgagctgcagccgctcgcgcagcac
tatcagcgggcggtcgcgcagcgcggcggcgtcgcggacgcgcggctcgccgagtttcgc
tggctcctcgaagagctgcggatctcgctcttcgcgcaggagctgcgcacgccgatgccc
gtgtcggtcaagcggctccacaaagtgtgggagtcgatgcagcgctga
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