Burkholderia oklahomensis EO147: DM82_2072
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Entry
DM82_2072 CDS
T03284
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bok
Burkholderia oklahomensis EO147
Pathway
bok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM82_2072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bok03019
]
DM82_2072
03009 Ribosome biogenesis [BR:
bok03009
]
DM82_2072
Enzymes [BR:
bok01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DM82_2072
Messenger RNA biogenesis [BR:
bok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DM82_2072
Ribosome biogenesis [BR:
bok03009
]
Prokaryotic type
rRNA processing factors
DM82_2072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIO65429
UniProt:
A0AAI8B4N2
LinkDB
All DBs
Position
1:2395128..2398286
Genome browser
AA seq
1052 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEEAKPRQEAAVKGITPER
PAPSAAPQRQPAPAAAPVAAAPASGGFVKWLKNLFGMQPAAVPAPAPAAQEPAARPARER
GERGEKAERGGDRNRNRRGSGGAQQAGGRDQAAAGGGRGQAPRAEREAKETREPREGREA
REGREGREGRGGRDNREGREARETREPREPREPRERAETADAAEAPRSERRERGERRKPV
PHVATLETVNRGESAHAEPAEQPAHALGAEAGVEADSNARDGEERRRRRRGRRGGRRERD
DETAGAAQAAEAGEGVTAETAAYAAEAPQGVAPVADHEPQHAVQAGAGVAAVAAAAVAAE
AIAHVESDVKVEPQAAAEAPAASAEPIAAAPARAAEAPAEAAPAATHAEPAPVESAHVQA
APVETAPAEAAPAEAPAAEASEAAAPAVAPAPIPEPAPAVEPHPAPAAVAPAEASVPHEP
AAVAEAQAPSAAPAEAVAPAAVAAPVAAASSASLETVLESAGLVWVNTDTDKLRAAQAAA
AQIAPSVRAPRERKPLPPVDTTPMQQVETTHR
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgatatcgacatcgaaaccgccggacgcgaacaacgcaaaggcaat
atctacaagggcgtcgtcacccgcatcgaaccgtcgctcgaagcctgcttcgtcaactac
ggcgaagatcgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcattcaggacgcgctgcgcgaaggtcaggagctgatc
gtccaggtcgagaaggaggagcgcggcaacaagggcgcggcgctcaccacgttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggagctgcgcgagacgatggcgcagcttcagatcccc
gacggcatgagcatgatcgcccgcacggcgggcatcggccgcagcgccgaggaattgcaa
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcggcgtcgcaaagcggc
catcccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgcgcgatccgg
gactatttccagccggacatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtccccctcttctcccgcttccagatcgagcaccagatcgagacggcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgtgcgacgaagggcgcggacatcgaggagacggcgacc
cgcacgaacctcgaggcggccgacgaagtcgcgcgccagctccgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggagtcggcgaagagccagcgtgaagtcgag
cagcgtctgaaggacgcgctcaagcacgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggcgctgtccgaaggcagc
cacgtcacctgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaggcgatgaaggagaacaccgcggcgatccac
tgccaggtgcccgtcgaggtgaccgccttcctgctcaacgagaagcgtcaggaaatcaac
aagatcgaatcgcgcttcaaggtcggcgtcgtgctgatcccgaacaagcatctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgca
tcgtggaagatggccgaggaagccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaagcgaagccgcgccaggaagcggccgtcaagggcatcacgcccgaacgc
cccgcaccgagcgccgcgccgcagcgccagcccgcaccggcggcggcgcctgtcgccgcc
gcgccggcaagcggcggcttcgtcaagtggctgaagaacctgttcggcatgcagccggcc
gcggtgcccgcaccggcgcccgctgcccaggaaccggccgcgcgtccggcgcgcgaacgc
ggcgaacgcggcgagaaggccgagcgcggcggcgatcgcaaccgcaaccgtcgcggcagc
ggcggcgcgcagcaggcaggcggacgcgaccaggccgcggcaggcggcggacgcggtcag
gccccgcgcgccgagcgcgaagccaaggaaacccgcgaaccgcgcgaaggccgcgaggca
cgtgaaggtcgggaaggccgggaaggccgcggcggccgggacaatcgcgaaggccgcgaa
gcacgcgaaacccgcgagccgcgcgagccgcgtgagccgcgcgagcgcgcggagacggcc
gatgccgcggaagcgccgcgcagcgagcgccgtgaacgcggcgagcgccgcaagccggtc
ccgcacgtcgcgacgctcgaaaccgtgaaccgcggcgaaagtgcccacgcggagccggcc
gagcagccggctcacgcgctcggcgcggaagccggcgtcgaagcggattcgaacgcccgc
gacggcgaggaacgccgccgtcgccgccgcggtcgccgcggcggccgccgcgagcgcgac
gacgaaaccgcaggcgcagcacaagcggcggaagccggcgaaggcgtgacggccgaaacg
gccgcatacgcagccgaagcgccgcagggcgtcgcgccggtcgccgaccacgaaccgcag
cacgccgtacaagcgggcgcaggcgtggcggcggttgctgccgcggcagtcgccgcggaa
gcgatcgctcacgtcgagagcgacgtgaaggtcgagccgcaagcggccgctgaagcgcct
gccgcttcggccgagccgatcgccgcggcgccggctcgagccgccgaagcaccggcggaa
gccgctccggctgcgacgcatgccgaaccggctccggtcgaaagcgcgcacgtgcaagcc
gctccggtcgaaactgcgcccgctgaagccgcgccggccgaagcgcctgccgcagaagcg
tccgaagccgccgccccggcggttgctccggccccgatccccgagccggccccggccgtc
gagccgcatcccgcgcccgccgcagtcgcccctgccgaggcaagcgtcccgcacgagccg
gccgccgtcgccgaggcacaagcgccgtcggctgcccccgccgaggccgtcgcaccggct
gcggtagcagccccggtcgcggccgcgtcgagcgcgagcctcgaaacggtgctcgaatcg
gccggcctcgtctgggtcaacacggacacggacaagctgcgcgcggcgcaggccgccgcc
gcgcaaatcgcgccgtccgtccgtgcgccgcgcgaacgcaagccgctgccgcccgtcgac
acgacgccgatgcagcaagtcgagacgacgcaccgctga
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