Burkholderia oklahomensis EO147: DM82_705
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Entry
DM82_705 CDS
T03284
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bok
Burkholderia oklahomensis EO147
Pathway
bok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DM82_705 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bok03400
]
DM82_705 (recD)
Enzymes [BR:
bok01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DM82_705 (recD)
DNA repair and recombination proteins [BR:
bok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DM82_705 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
SH3_13
Helicase_RecD
SLFN-g3_helicase
RecD_N
DEAD
MukB
UvrD_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIO65458
UniProt:
A0AAI8B4E2
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All DBs
Position
1:822757..825375
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AA seq
872 aa
AA seq
DB search
MSTVDERFAWTGGLADRLPEPADFGLALAEGFARRIGMLSRRLGAPAAAARWAARAAFAA
SRATAAGHVCVSLHALAQRYDEPFTDVRDALAASGVTAFGGIARGGECPLVVDRDGRLYL
ARYFEYETRLATALVARARSGDAAAGGAGELAPEALGERLGRYFGPQKERGVDWQRVAAL
VALTGRVTIVSGGPGTGKTTTVVGVIACLLDAHPDLRIALAAPTGKAAQRMQEALYARAG
SLPAELAMRLPQTSYTLHRLLGGGPGGRFAHHRDNPLPYDLVVVDEASMIDVALAAHLLD
ALAPNTRLVLLGDKDQLAAVEAGAVFAELSAQPAFSATACATIARALGIDEAEFVAALPD
GFVRGAAGIEKAGAGADARAAVIDASAAARASATAAAPAARATATAAAKAAAEPAPRVGR
RGGARESKRAADDAQGSLFAFDDESAPGDDASGNDMPGGDTTGDAQQNRRDTPDVHASSN
VQDVYGMGGAQRIRARADNGFPADLPRDASAAERAAWIDAGELAWLDNASFSSLEDAATN
AASGERRIASAAGAGARVRADALTGMSADAGAETGASASMMMSAEAASSAASAVAPLTDC
VVWLERNYRFGLDSPIGRLSLAIRRGAVQDALDALSTADDAAARFCDDGGATLSAATIER
IAQGFAGYAAALRDALATHSPDPLPLFDVLNRFRVLCATRTGARGADEVNARVAAEVRRA
VRVPLAIGAHWFAGRPVMVTRNDYALGLFNGDIGIALPDARGALRVWFRGADGRARPVSP
AALPPHDTAFALTVHKSQGSEFDDAALILPASFNRVLSRELVYTAITRARSRVQVIGSRA
VLALAIATRTARDSGLAARIADALRARPEGMR
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtcgacgaacgcttcgcgtggacgggcggcctggccgaccgtctgcccgag
ccggccgatttcggcctcgcgctcgccgaaggcttcgcgcgccggatcggcatgctgtcg
cgccgcctcggcgcacctgccgcggcggcgcgctgggcggcgcgcgcggcgttcgccgcg
agccgcgcgacggcggcggggcacgtgtgcgtgtcgctgcacgcgctcgcgcagcgctac
gacgagccgttcaccgacgtgcgcgacgcgctcgcggcgagcggcgtgaccgcattcggc
gggatcgctcgcggcggcgagtgtccgctcgtcgtcgatcgcgacgggcgcctgtatctc
gcgcgctacttcgaatatgagacgcggctcgcgaccgcgctcgtcgcacgagcccgttcc
ggcgatgccgcggcgggcggtgccggcgagctcgcgcccgaggcgctcggcgagcggctc
gggcgctatttcggcccgcagaaggagcggggcgtcgactggcagcgcgtcgcggcgctc
gtagcgctgacgggccgtgtgacgatcgtgagcggcgggccgggcaccggcaagacgacg
acggtcgtcggcgtgatcgcgtgcctgctcgacgcgcatccggacttgcggatcgcgctc
gccgcgccgaccggcaaggcggcgcagcggatgcaggaggcgctgtacgcgcgcgccggc
agcttgccggccgagctcgcgatgcgcctgccgcagacgtcgtacacgctgcaccggctg
ctgggcggcggtccgggcgggcgtttcgcgcatcaccgcgacaacccgctgccgtacgac
ctcgtcgtcgtcgacgaagcgtcgatgatcgacgtcgcgctcgccgcgcacctgctcgat
gcgctcgcgccgaacacgcgcctcgtgctgctcggcgacaaggatcagctcgcggccgtc
gaagcgggcgcggtgttcgcggagctgagcgcgcagcccgcattcagcgcgacggcgtgt
gcgacgatcgcgcgcgcgctcggtatcgacgaggccgagttcgtggcggcgctgccggac
ggattcgtccgcggcgcggcggggattgagaaggcgggggcgggcgcggacgcacgcgcg
gccgtcatcgatgcgagcgcggcggcgcgcgcttcggccactgcggccgcgccggcggcg
cgagccacggctacggcggccgccaaggccgctgccgaacctgcgccgcgcgtcggccgg
cgcggcggcgcacgcgaatcgaaacgcgccgccgacgacgcgcagggatcgctgttcgcg
ttcgacgatgaaagcgcgccgggcgacgacgcgtcgggcaacgacatgccgggcggcgat
acgacgggcgacgcgcagcagaatcggcgcgacacgccggacgtgcacgcgtcgtcgaac
gtgcaggacgtttacggcatggggggcgcgcagcgcatacgggcacgggccgacaacgga
tttccggccgatttgccgagggacgcgtccgccgccgagcgggccgcgtggatcgacgcg
ggcgagctcgcgtggctcgacaacgcgtccttctcgtcactcgaagacgccgcgacgaat
gccgcgtcgggcgagcggcgcatcgcatcggcggccggagccggcgcacgtgtacgtgcc
gatgcgttgacgggcatgagcgccgatgcaggcgcggagacgggcgcttcggcttcgatg
atgatgtccgccgaagccgcatcgtcggcagcatccgccgtcgcgccgctgaccgactgc
gtcgtctggctcgagcgcaactatcgcttcggcctcgattcgccgatcggcaggctgtcg
ctcgcgatccgccgcggcgccgtgcaggacgcactcgatgcgttgtcgacagcagacgat
gcggccgcgcgcttctgcgacgacggcggcgcgacgctgtcggccgcgacgatcgaacgg
atcgcgcagggcttcgccggctacgcggccgcgctgcgcgacgcactcgcgacgcactcg
cccgatccgctgccgctcttcgacgtgctcaaccgcttccgtgtgctttgcgcgacgcgc
acgggcgcgcgcggcgcggacgaggtcaatgcgcgcgtcgcggcggaggtgcgccgcgcg
gtgcgcgtgccgctcgcgatcggcgcgcactggttcgcgggacggcccgtgatggtgacg
cgcaacgattacgcactcgggctgttcaacggcgacatcggcattgcgctgccagacgcg
cgcggcgcgctgcgcgtctggttccgaggcgcggacggccgcgcgcgcccggtgtcgccc
gccgcgctgccgccgcacgacacggcgttcgcactgaccgtccacaagtcgcagggctcg
gagttcgacgacgcggcgctgattctgcccgcgtcgttcaaccgcgtgctgtcgcgcgag
ctcgtctacacggcgatcacgcgcgcgcgttcgcgcgtgcaggtgatcggctcgcgcgcg
gtgctcgcgctggcgattgcgacgcgcaccgcgcgcgattccgggttggccgcgcgaatc
gcagacgcgctgcgcgctcggccggaggggatgcgatga
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