Bos mutus (wild yak): 102270024
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Entry
102270024 CDS
T02919
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bom
Bos mutus (wild yak)
Pathway
bom03013
Nucleocytoplasmic transport
bom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bom00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102270024 (UPF1)
03015 mRNA surveillance pathway
102270024 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bom03019
]
102270024 (UPF1)
Enzymes [BR:
bom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102270024 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102270024 (UPF1)
Messenger RNA biogenesis [BR:
bom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102270024 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102270024 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102270024
NCBI-ProteinID:
XP_070229473
LinkDB
All DBs
Position
7:46993614..47027212
Genome browser
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
GAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcttggacactgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcaccctc
cccagccagacgcagacgccccccggcggcccgggaggtggcggcgcgggggccccggtc
ggagccggcccgggcgcggcggccggacagctcgacgcgcaggttggtggccctgagggc
atcctgcagaacggggccgtggacgacagcgtggccaagaccagccagttgttggccgaa
ttgaactttgaagaagatgaagaagatacctattacacaaaggatctgcctgtacatgcc
tgcagttactgtggaatacacgatcctgcttgcgtggtttactgtaacaccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctaggggagacggttctggag
tgttataactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggccgac
tcggttgtggtgctgctgtgcaggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcccagtggcagcccctgatccaggaccggtgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcaccgcccagcagatc
aacaagctggaggagctctggaaggagaacccttctgccaccttggaggacctggagaag
cccggagtggacgaggagccgcagcacgtcctcctgcgctacgaggacgcctaccagtac
cagaacatatttgggcctctggtcaagctggaggctgactacgacaagaagctgaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcg
cccctctggaaagggatcggccacgtcatcaaggtccctgataattatggcgatgagatt
gctattgagcttcggagcagcgtgggcgcccctgtggaggtgactcataacttccaggtg
gatttcgtgtggaagtcaacctcattcgacagaatgcagagcgcactgaaaacctttgcc
gtggatgagacctccgtgtcgggctacatctaccacaaactgcttggccatgaggtggag
gatgtgatcatcaagtgccagctgcccaagcgcttcacggcacaggggctccccgacctc
aaccactctcaggtttacgccgtgaagactgtgctgcagagaccactgagtctgatccag
ggcccaccgggcacaggaaagaccgtgacctcagccaccatcgtctaccacctggctcgg
caaggcaacgggcctgtgctggtctgtgctccaagcaacatagccgtggatcagctgact
gagaagatccaccagaccgggctgaaagtcgtgcggctctgcgccaagagccgcgaggcc
atagactccccggtgtccttcttggccctgcacaaccagatcaggaacatggacagcatg
ccagagctccaaaagctgcagcagctgaaggatgagactggggagctgtcgtcagcggac
gagaagcgttacagagccctgaagcgcactgccgagagggagctgctcatgaacgcagat
gtcatctgctgcacgtgtgtgggcgcaggagacccgaggctcgccaagatgcagttccgc
tccattttaatcgacgaaagcacgcaggccaccgagccagagtgcatggtccctgtggtc
cttggagccaagcagctgatcctcgtgggtgaccactgccagctgggccctgtggtgatg
tgcaagaaggcggccaaggccgggctgtcgcagtcgctctttgaacgcctggtggtgctg
ggcatccgccccatccgcctccaggtccagtaccggatgcaccccgcgctcagcgccttc
ccgtccaacatcttctacgagggctctctccagaatggcgttaccgcagcggatcgtgta
aagaaggggtttgactttcagtggccccaaccggataaaccaatgttcttctatgtgacc
cagggccaagaggagattgccagctcaggcacctcctacctgaacaggacggaggctgca
aacgtggagaagatcaccacgaagctgttgaaggcgggcgccaagccggaccagatcggc
atcatcacgccctacgagggccagcgctcctacctggtgcagtacatgcagttcagcggc
tccctgcacaccaagctctaccaggaggtggagattgccagcgtggacgcgttccagggg
cgtgagaaggactttatcatcctctcctgtgtgcgggccaatgagcaccaaggcattgga
tttttgaatgaccccaggcgactcaacgtggccttgaccagagcacgatacggggtcatt
atcgtgggcaacccgaaggccctgtccaagcagccgttatggaaccacctgctgaactac
tacaaggagcagaaggtgctggtggagggacccctgaacaacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgacg
acagccatgtatgatgcccgggaggccatcatcccagggtcggtctatgaccggagcagc
cagggccggccctcgaacatgtacttccagacccacgaccagattggcatgatcagcgcc
ggccccagccacgtggctgccatgaatatccccattcccttcaacctggtcatgccgccc
atgccgccaccggggtattttggacaagctaatgggccagccgcaggccgaggcaccccg
aaaggcaagactggtcgtggggggcgccagaagaaccgctttgggcttcctgggcccagt
cagacgaatctccccaacagccaggccagccaggatgtggcgtcccagcccttctcccag
ggcgccctgacccaaggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagctaccttggagatgagtttaagtcacagatc
gacgtggcgctgtcgcaagactccacataccagggcgagcgggcgtaccagcacggtgga
gtgacggggctgtcccagtactag
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