KEGG   Bos mutus (wild yak): 102275709
Entry
102275709         CDS       T02919                                 
Symbol
SDC1
Name
(RefSeq) syndecan-1
  KO
K06257  syndecan 1
Organism
bom  Bos mutus (wild yak)
Pathway
bom04512  ECM-receptor interaction
bom04514  Cell adhesion molecule (CAM) interaction
bom04820  Cytoskeleton in muscle cells
bom05144  Malaria
bom05205  Proteoglycans in cancer
bom05418  Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:bom00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102275709 (SDC1)
   04514 Cell adhesion molecule (CAM) interaction
    102275709 (SDC1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102275709 (SDC1)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    102275709 (SDC1)
  09174 Infectious disease: parasitic
   05144 Malaria
    102275709 (SDC1)
  09166 Cardiovascular disease
   05418 Fluid shear stress and atherosclerosis
    102275709 (SDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:bom04131]
    102275709 (SDC1)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:bom04090]
    102275709 (SDC1)
   00535 Proteoglycans [BR:bom00535]
    102275709 (SDC1)
Membrane trafficking [BR:bom04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    102275709 (SDC1)
CD molecules [BR:bom04090]
 Proteins
  102275709 (SDC1)
Proteoglycans [BR:bom00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   102275709 (SDC1)
SSDB
Motif
Pfam: Syndecan Romo1
Other DBs
NCBI-GeneID: 102275709
NCBI-ProteinID: XP_070235266
LinkDB
Position
11:complement(28087907..28112652)
AA seq 310 aa
MRRAALWLWLCALALRLQPALLHSVAVNMPPEDQDGSGDDSDNFSGSGAGALPDITSSHT
PSTWKDLGPVMTTATAPEPTSPDAIAASTTILPTGEQPEGGRAVLLAEVEPGLTAQKEAT
HPPSETTLHPTTHSVSTARATMAPGPATSHPHRDVQPDHETSAPTGRGRMEPHRPHVEEG
GPPATEKAAEEDPSTQIPVGEGSGEQDFTFDLSGENAAGAAVEPGSRNGAPEDPEATGAT
GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
KPTKQEEFYA
NT seq 933 nt   +upstreamnt  +downstreamnt
atgaggcgcgcggcgctctggctgtggctctgcgcgctggcgctgcgcctgcagccggcc
ctcctgcacagtgtggccgtaaacatgccccccgaagatcaggatggctctggggacgac
agtgacaacttctctggctcgggcgcaggtgctttgccagatatcacctcatcacacacg
ccctccacctggaaggacctggggcccgtgatgaccacagccacggctccagagcccacc
agcccagatgccatcgccgcctccaccaccatcctgccaaccggagagcagcctgagggg
ggcagggcagtgctcctggcagaggtggagcctggcctcaccgcccagaaggaggccacc
cacccacccagtgagaccacactgcacccgaccactcacagcgtgtccacagccagagcc
accatggccccaggacccgccacctcccatccgcacagggacgtgcagcccgaccacgag
acctcggctcccacaggccggggccgtatggagccgcacaggccccacgtggaggaggga
ggtcctcctgccactgagaaggcggctgaggaggacccctccacccagatcccagtggga
gagggctctggggagcaggacttcaccttcgacttgtctggggagaatgcggccggggcc
gcagtggaacctggctcacggaatggagccccggaggatcctgaggccacgggggctacg
ggggcctcacagggcctcctggatcggaaggaagtcctgggaggggtcattgctggaggc
ctcgtggggctcatctttgccgtgtgcttggtgggtttcatgctgtaccggatgaagaag
aaggacgagggcagctactccttggaggagccaaaacaagccaacggcggggcctaccag
aagcccactaagcaggaggagttctacgcctga

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