Bos mutus (wild yak): 102276187
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Entry
102276187 CDS
T02919
Symbol
COL11A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
bom
Bos mutus (wild yak)
Pathway
bom04820
Cytoskeleton in muscle cells
bom04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
bom00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102276187 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102276187 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bom00536
]
102276187 (COL11A1)
Glycosaminoglycan binding proteins [BR:
bom00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102276187 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
102276187
NCBI-ProteinID:
XP_070223687
LinkDB
All DBs
Position
3:38794930..39024526
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AA seq
1805 aa
AA seq
DB search
MERWSSRWKTKRWLWDFTITTLALTFLFQAREVRGADPVDVLKALDFHNSPEGISKTTGF
CTNRKNSKGSDTAYRVSKQAQLSAPTKQLFSGGTFPEDFSILFTIKPQKGIQSFLLSIYN
EHGIQQIGVEVGRSPVFLYEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSEKAIVDTNGIMVFGTRILDEEVFEGDIQQLLIIGDPKAAYDYCEHYS
PDCDSSAPEAAQAQEPQVDEYAPEDIMEYDYEYGEAEYKEAESVTETPTVTEETIAQTEA
NIVDDFQEYNYGTESYQTEAPRSVSGSNEPNPVEEVFTEEYLTGEDYDSQRKNSEDMLYE
NKQIDGRDSDLLVDGDLGEYDFYEYKEYEDKPTSPTNEEFGPGVPAETDITETSINGHGA
YGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPPGRPGLPG
ADGLPGPPGTMLVLPFRYGGDSSKGPTVSAQEAQAQAILQQARIALRGPPGPMGLTGRPG
PVGGPGSSGAKGEMGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRG
FDGLPGLPGDKGHRGERGPQGPPGPPGEDGIRGEDGEIGPRGLPGEAGPRGLLGPRGTPG
PIGQPGIAGVDGXPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG
LAGLPGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKG
EDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPPGQAGEKGKLGVPG
LPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPG
PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG
PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDG
PAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG
PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKG
DKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQG
LPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAG
NPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPG
EPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKG
EAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPG
LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPG
PPGLPGPQGPKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHAEST
QADAGDNILDYNDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGE
YWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKLL
SYLDIEGNSINMVQMTFLKLLTASARQNFTYYCHQSVAWYDVSSGSYDKALRFLGSNDEE
MSYDNNPYIKALFDGCASRKGYEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGP
VCFLG
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtggtcctctaggtggaaaacgaaacggtggctctgggatttcaccataaca
actctcgcactgactttcctcttccaggctagagaggtcagaggagctgatccagttgat
gtactaaaagctctagattttcacaattctccagagggaatatcaaaaacaacgggcttt
tgcacaaacagaaagaattcaaaaggttcagatactgcttacagagtttcaaagcaagca
caacttagcgccccaacgaaacaattattttcagggggaacttttccagaagatttttca
atattatttacaataaaaccccaaaaaggaattcagtctttccttttatctatatataat
gagcacggtattcagcaaattggtgttgaggttgggagatcacctgttttcctgtatgaa
gaccacactggaaaacctgccccagaagactatcccctttttagaaccgttaacattgca
gatggaaagtggcaccgggtagcaatcagcgtggagaagaaaactgtgacaatgattgtt
gattgtaagaagaaaactacaaaaccgcttgacagaagtgagaaagcaatcgttgacacc
aatggaattatggtttttgggacaaggattttggatgaagaagtttttgagggggacatc
cagcaattgttgatcataggtgaccccaaagcagcatatgactactgtgagcattacagt
ccagactgtgattcctcagctcccgaggctgctcaggctcaggaaccccaggtcgacgag
tatgcacctgaggatataatggaatatgactatgagtatggggaagcagaatataaagag
gctgagagtgtaacagagacacccactgtaactgaggagacaatagcacaaactgaggca
aatattgttgatgattttcaagaatacaactatgggacagaaagttaccagacggaagct
cctaggagtgtatctggatcaaatgagccaaatccagttgaagaagtatttactgaagaa
tatctaactggagaggattatgattcccagaggaaaaattctgaggatatgctatatgaa
aacaaacaaatagacggcagggactctgatcttctggtagatggagatttaggcgaatat
gatttttatgaatataaggaatatgaagataaaccaacaagtcccactaatgaagaattt
ggtccaggtgttccagcagaaacagatatcacagaaacaagtataaatggccatggtgca
tatggagaaaaaggacagaaaggagaaccagcagtagttgaacctggcatgcttattgaa
ggaccaccagggcctgcaggacctgcgggtcttatgggtcctccaggtctacaaggcccc
actggaccccctggtgaccctggcgagaggggtcctccaggacgtcctggtttaccaggg
gctgatggtctacctggtcctcctggtaccatgttagtgttaccgtttcgttatggcggt
gatagttccaaaggaccaaccgtctctgctcaggaagctcaggcccaggccattcttcag
caggctcggattgctttgagaggtccacctggcccaatgggtctgactggaagaccgggt
cctgtgggtgggcctggttcttctggggccaaaggtgagatgggtgatccaggtcctcag
ggcccacgtggtgtccaaggtcctcctggtccaacaggaaaacctggaaaaaggggtcgt
ccgggtgctgatggaggaagaggaatgccaggagaacccggggccaagggggatcgagga
tttgatggacttccaggtctaccaggtgacaagggtcacaggggtgaacgaggtcctcaa
ggtcctcctggtcctcctggtgaagatggaataaggggagaagatggagaaataggacca
aggggtcttccaggtgaagctggtccacgaggtttgctaggaccaagaggaactccagga
cctattggacagcctggtatagcgggtgtggatggcnnccccggaccaaaagggaacatg
ggtcctcaaggggagccgggacctcctggtcagcagggaaacccaggacctcagggtctt
cctggtccacaaggtccaattggtcctccgggtgaaaaaggtccacaaggaaaaccaggg
cttgcaggacttcctggtgctgatgggcctcctggtcatcctggaaaagaaggccagtct
ggagaaaaaggttctctgggccctcctggtccacagggtcccattggctaccctggtccc
cgaggagtaaagggagcagatggtgtcagaggtctcaaaggctctaaaggtgaaaagggt
gaagatggttttccaggattcaaaggtgacatgggtctcaaaggtgatagaggagaagtt
ggtcaagtaggtccaagaggagaggatggccctgaaggccccaaaggtcgagctggtcca
accggagaccccggtcctcctggtcaggcaggagagaaggggaaacttggcgttccagga
ttaccaggatatccaggaagacaaggtccaaagggttccactggatttcctgggtttcca
ggtgccaatggagagaaaggtgcccggggcgtagctggcaaaccaggtcctcggggtcag
cgtggtccaacgggacctcgaggttcaagaggagcaagaggtcccactgggaaaccaggt
ccaaagggcacttcaggtggtgatggccctcctggccctcctggtgaaagaggtcctcaa
ggacctcaaggtccagttggattccctggaccaaaaggccctcctggaccacctggaaaa
gatggcctgccaggacatcctgggcaacgtggagagactggatttcaaggcaagaccggc
cctcctgggccagggggtgttgttggaccacagggaccaactggtgagactggtccaata
ggtgaacgtggacatcctggccctcctggccctcctggggagcaaggtcttcctggtgct
gcaggaaaagaaggtgcaaagggtgacccaggtcctcaaggtgtctcagggaaagatgga
ccagcaggactacgtggtttcccaggtgaaagagggcttcctggagctcagggtgcccct
ggattgaaaggaggagaaggtccccagggcccaccaggtccagttggctcaccaggagaa
cgtggatcagcaggaacagctggcccaattggtttgccagggcggccaggaccccagggt
ccccctggtccagctggagagaaaggtgctccaggagaaaaaggtccccaaggtcctgca
gggagagatggagtacaaggccctgtgggtctccccgggcctgcggggcctgctggctcc
cctggagaagatggagacaagggtgaaattggtgaaccaggacaaaaaggcagcaagggt
gacaaaggagaaaacggtcctcctggtcccccaggtcttcaaggtccagttggtgcccct
ggaattgctggaggtgatggtgaaccaggtcccagaggtcagcaggggatgtttggacaa
aaaggtgatgagggtgccagaggtttcccaggacctcctggtcccataggtcttcagggt
cttccaggcccacctggtgaaaaaggagaaaatggggatgttggtcccatgggtccacct
ggtcctccaggcccaagaggtcctcaaggtcccaatggagctgatggaccacaaggacct
ccaggatccattggctcagttggtggtgttggagaaaagggtgaacctggagaagcaggg
aacccagggcctcctggggaagcaggcacaggtggtcccaaaggagaaagaggagagaaa
ggagaagctggtcccccaggtgctgctggacctcctggtgctaagggaccgccaggtgat
gatggccctaagggtaatccgggtcctgttggttttcctggagatcctggtcctcctggt
gagcctggccctgcaggtcaggatggtgttggtggtgacaagggtgaagatggagatcct
ggacaaccgggtcctcctggcccatctggtgaggctggcccaccaggtcctcctggtaaa
agaggtcctcctggagctgcaggggcagagggaagacaaggtgaaaaaggcgctaaggga
gaagcaggagctgagggtcctccaggaaaaactggcccggttggtcctcagggaccggcc
ggaaagcctggtccagagggtcttcggggcatccctggccctgtgggagaacaaggtctc
cctggagctgcaggccaagatgggccacctggtcctttgggacctcctggcttacccggt
ctcaaaggtgaccctggctccaagggtgaaaagggacatcctggtttaattggcctaatt
ggtcctccaggagaacaaggtgaaaagggtgacagaggactccctggaactcaaggatct
ccaggagcaaagggagatggaggaattccaggtcctgccggtcccattggtccacctggt
cctccgggcttaccaggtcctcaaggtccaaagggcactaaaggctctacgggacctgct
ggccagaagggtgacagtggtcttccagggcctcctgggcctccgggtccaccaggtgaa
gtcatacagcctttaccaatcttgtcacccaaaaaaacaagaagacatgctgaaagcacg
caagcagatgcaggtgataatattctggattacaatgatggaatggaggaaatatttggt
tccctcaattccttgaaacaagacatcgagcatatgaagtttccaatggggacacagacc
aatccagcccgaacttgcaaagatctgcaactcagccaccctgacttcccagatggtgaa
tattggattgatcccaaccaaggttgctcaggagattccttcaaagtttactgtaatttc
acatctggtggtgagacttgcatttatccagacaaaaaatcggagggagtaagaatttca
tcatggccaaaggagaaaccaggaagctggtttagtgaatttaagagaggaaaactgctt
tcatatttagatatcgaaggcaattccattaatatggtgcaaatgacatttctgaaactg
ctgactgcctctgctcggcaaaatttcacctattactgtcatcagtcagtggcctggtat
gatgtgtcatcaggaagctatgacaaagcacttcggttcttgggatcaaatgatgaggag
atgtcctatgacaacaacccttacatcaaagccctatttgatggctgtgcgtccagaaaa
ggctatgaaaagactgtgattgaaatcaatacaccgaaaattgatcaagtacctatcgtt
gatgtaatgatcaatgactttggtgatcagaatcagaagtttggatttgaagttggtcct
gtttgttttcttggctaa
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integrated database retrieval system
