Bos mutus (wild yak): 102283421
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Entry
102283421 CDS
T02919
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X2
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
bom
Bos mutus (wild yak)
Pathway
bom04140
Autophagy - animal
bom04148
Efferocytosis
bom05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
bom00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102283421 (VPS39)
04148 Efferocytosis
102283421 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
102283421 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bom04131
]
102283421 (VPS39)
Membrane trafficking [BR:
bom04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
102283421 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Lgl_C
SAM_CEP-1_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
102283421
NCBI-ProteinID:
XP_005904040
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All DBs
Position
10:70561922..70608906
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AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHAETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGANKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKAPVPAGEEEGELGEYRRKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccgattctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggctgcttgttggaacaaaacaaggtcatcttcttctctat
aggattcggaaagacgttggttgcaacaggtttgaagtgacattagagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtctcccagtttaagattctggtcagc
ttgttagaaaataatatttacgtccatgacctgttgacatttcaacaaatcactacggtt
tccaaggcaaagggagcatcattgttcacatgtgaccttcagcacgcagagactggggag
gaggtgttgcggatgtgtgttgccgtgaaaaagaagctgcagctctatttctggaaagac
agggaatttcatgagttgcagggggactttagtgtaccggatgtgcccaagtccatggca
tggtgcgaaaattctatctgtgtgggcttcaagagagactactacctaataagggtggat
ggaaagggggccaacaaagagctcttcccaacaggaaaacagctggaacccttagttgca
cctctggcggatggaaaagtagctgtgggtcaggatgatctcactgtggtgctcaatgag
gaggggatctgcacgcagaagtgtgccctgaactggacagacatcccagtggccatggag
caccagcctccctacatcattgcagtgttgcctcgatatgtggaaatccggacatttgag
ccgaggcttctggtccagagcattgaactgcaaagaccccgtttcattacttcgggcgga
tcaaacattatctatgtggccagtaatcactttgtctggagactcattccagtccccatg
gcgacccaaatccaacagcttctccaggacaagcagtttgaattggctctgcagctcgca
gaaatgaaagatgattccgacagtgaaaagcagcaacagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaaa
cttggcacagatcctacccatgtgatgggcctgtacccagacctgctgcccacagactac
aggaagcagctgcagtatcctaacccactgcctgtgctgtctggggctgagctggagaag
gctcacttagctctaattgactacctgacacagaaacgcagccaattggtaaagaagctg
aatgactctgatcaccagtctagcacctcccctctcatggaagggactcctaccatcaaa
tccaagaaaaagctgctgcagatcattgacaccaccctgctcaaatgctaccttcatacg
aacgtggccctggtggcccccttgctgcgtctggagaacaatcactgccacatcgaagag
agcgagcatgtgctgaagaaggctcacaagtacagtgagctgatcatcctgtacgagaag
aaggggctccacgagaaagctctgcaggtgctggtggaccagtccaaaaaagcaaattcc
cctctgaaaggccatgagcggacagtgcagtacctgcaacatctgggcacagaaaatctg
catctaattttttcctactcggtgtgggtgctgagagactttccagaggatggtctgaag
atatttactgaggacctcccagaggtggagtctctgccacgagaccgagtgctgggcttc
ttagtggagaattttaagggtctggctattccgtatctggaacatgtcatccacgtttgg
gaggagactggctctcggttccacaactgcctgatccagttgtactgcgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaagctccagtccctgctggt
gaggaggaaggagagctgggagaataccgacggaagctccttatgttcctggaaatttcc
agctactatgacccaggccggctcatctgtgattttccttttgatggcctcttggaagaa
cgtgccctcctgctgggacgcatggggaaacatgaacaagctctcttcatctacgtccac
gtcctgaaagacacgaggatggctgaagagtactgccacaagcattatgaccaaaacaaa
gatggcaacaaagatgtgtatctgtccctgctccggatgtacctgtcgccccccagcgtg
cactgcctggggccgatcaagctggaactgctggagccacaagccaacctccaggccgcc
ctgcaggtcctagagctgcaccacagcaagctggacaccaccaaggccatcaacctgctg
cccgcaaacactcagattaacgacatacgcatctttctggaaaaggtcttagaagagaat
gcacagaagaaacggttcaaccaagtgctcaagaaccttctccatgcagagttcctgagg
gtccaggaagagcgcatcctgcaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgcatggtgtgtaagaagaagattgggaacagcgcatttgcaagataccccaatggggtg
gtcgtgcattacttctgctccaaagaggtcaacccagctgacacctga
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