Bos mutus (wild yak): 102283440 Help Entry 102283440         CDS       T02919                                  Symbol SPG11 Name (RefSeq) spatacsin isoform X1   KO K19026   spatacsin Organism bom  Bos mutus (wild yak) Pathway bom04142   Lysosome bom05014   Amyotrophic lateral sclerosis bom05022   Pathways of neurodegeneration - multiple diseases Brite KEGG Orthology (KO) [BR:bom00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     102283440 (SPG11)  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     102283440 (SPG11)    05022 Pathways of neurodegeneration - multiple diseases     102283440 (SPG11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:bom03400]     102283440 (SPG11) DNA repair and recombination proteins [BR:bom03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      102283440 (SPG11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  102283440 NCBI-ProteinID:  XP_005888673 LinkDB All DBs Position 10:82857271..82933870 Genome browser AA seq 2428 aa AA seqDB search MAAEQGALPVLLVPVPAEAVGRLGSRAQLHREQAALGSLTAAGSLHVLPLAPGGRGGGDC RLEGCFRQFVWEDSHHSGTPNNKPRLLALTENYELLICEFNLEHGRCDATILYSYSEETL QKLVEDQNISISLLSLRILSFHNNTSLLFINKCVVLHVMFPERDAEIRVLSCCTLPLPAQ AVDRIIDTQLCRGILFVLSSLGWIYIFDIVDGKQVAHVDLALAQEDMCNEQQQEPAKSSS FTSLKVSQDLDVVVVVGFSNTAVALNLTLYFRQYPGHLLCEKTLQDSPIEGPKGIDEDDP VNSDYNMKLTKFSFRIDRSWKAQLSSLNETIKSSKLGGSCCAPWFQDISHLESPESGNRS TSVSDWAFIPQDVTCSPCNFPQKGPARTSDPGRVWKRMHIREQEEPLELTCVSVTGFTAL FTWAGESTGWTIVLWDLETQSTQCFSLGKKCIPVDSGGVQQLCLVLTESGLSLILFGLTQ EEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENHQLDTVDFFLKSKENLLTP SSKSSVPDQFDHFASHLYLKHVEELTPALDLLCSAIRENDSETQSKHFSEQLLNLTLSFL NKQIKELFIHIEELDEHLQKGVDILTSYIDELRTFMIKFPWKLTDAIDEYDVNENVPKVK ESNIWEKLSVEEVIANAILNNKIPEAQTFFRINSHSAQRLEELIRIGLDLVFDSLKKNNM EEASELLKNMGFNVKDQLLKICFYTADKSVRDFLVEIFKEKNYFSEKEKRTVDFVHQVEK FYSGHLQENIQIQSLPRYWIKEQDFSKHKSVLDSFLKYDHKDKLNKQDHRIVLNWAQWWN QPTQESILLPWINPEGYNSYSPEGLWRYLTAHHDWPSIILWIGEFQTQSSYASLEQNKWP PLTVDVVDQNTCCNNYMKNEILDKLARNGIFLTSELEDFELFLVRLNRVGGVMQDALALQ NYRSKEGWDFHSHFILYCLEHSLQYLLYVYLDHYKLSPPNCPFLGKKELHEAHPWFEFLV QCRQVSSNLTDPRLIFQASLANAQILIPSNQASVSSMLLEGHTLLALATTMYAPGGVSQV VQNGENENSLKKVDPQLLKMALTPYPKLKAALFPQYTAPSVLPPDITLYHLIQSLLPFDP SRLFGWQSANTLAIGDAASQLPHFSSPDLVNKYAVVERLNFAYYLHHGRPSFAFGTFLVQ ELTKSKTPKQLIQQVGHEAYVLGLSCFHISSIGAACVCFLELLGLDSLKLRVDMKVANII LNYKCGNEDAPYNSIRESLTEKLSKLALGERATIEELLVLLEEGIWSNIQQQQIQRLSSE SSSQWALVVQFCRLHNIKPSTSYLRECARANDWLQFIIHSQLHNHHPEEVKYLLQYFSPV LQDHLRLAFENLPSVSNSRMDSDQVCNRSSQELQRHKEEMTDFFQILLQCSEVPDSWCWL LGEAVRQKAPILSVLASCLQDASAVSCLCVWIIASVEPHVAAEAVGPLQDSAEGHVWGLE DLSVIWRTLLTRQKIRTLIRGFQLFFKDSPLLLMMEMYELCMFFKNYKEAEAKLVEFQQS LETLETAATRVPTAIPAPWLKEHVCFLLKLMLQQCSTQYELGRLLQLFVGIEHLFSDGPD VKKLCVLSQILKDTPIAINRAIITSYSLENFQRECRSVLEKLETDGLFALARRVAELAGL PVDDLVIEEITQEMQTLKHVDQWSLKQARIDFWKKCHENFKKNSVSSRAASSFFSAQALW AGECPAAGGPSSAEERHLLLTLAGHWLAREDPVPLEDLEGLEKQIWLCRVAQHTLRGSQE EGGPRAPQQASAGGELSFDGLASEFSFSNLAVLNTSKYLELTGFPSRDICDNELNWKEQA SLNCLIGRLLDDGCVHEASRACRYFRFYHQDVALVLHCRALASGEASVDDLHPEILALLR STELPEEEEEAGIPLRKVQSTSSLDSWSLVMLPPADEVVTNLETLTSKCLHGKNYCRQVL CLYELAKELGCSYADVAAQDGEAVLRAILASQQPNRCKRAQAFISTQGLRPDTVAELVAE EVTRELLTPSEGTGHRQVFAPAEESQTFLQLTALCQDRTLVGMKLLEKISSVPHGELSCT TELLILAHHCFTLTCHMEGIMRVLQAARLLTDNHLAPSEEYGLVVRLLTGIGRYNEMTYI FDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENH EAAACIQLKLIESQPWEDCVKDGQRLKQLLLKALTLMLDAAESYAKDSCVRQALHCHRLT KLITLQIHFLNTGQNTMLINLSRHRLMDCITALPRFYQASIVAEAYDFVPDWAEILYQQV ILKGDFNYLEEFKQQRLLRPSVFEEISIKCKHHQPTEFVLKNLKKLLTYCEDIYLYYKLA YEHKLYDVVNVLLKDPQTGCCLKDMLAG NT seq 7287 nt NT seq  +upstreamnt  +downstreamnt atggctgcggagcagggcgcgctgcccgttttgttggtgccggtccccgccgaggccgta gggcgactggggtctcgggcgcagctgcacagagagcaggcggccctggggagtctgacg gccgcaggcagccttcacgtacttcccttggcgccgggcggccgaggcgggggcgactgc cgcctggaaggctgttttcggcagtttgtgtgggaggattctcatcacagcgggacacca aacaacaagcccagactgcttgctcttactgaaaattatgaactgctcatctgtgaattt aatttggaacatggaagatgtgatgcaaccattttatatagctatagtgaagagacattg cagaagcttgttgaagatcaaaatatcagtatttccttattatctttgaggattctgtca tttcacaacaacacatcattattgttcatcaacaaatgtgttgtcttacatgttatgttt cctgaaagagatgctgagattagggtactcagctgttgcacattacccttacctgcgcag gcagtggacaggattattgacacgcagctctgcagaggaattctctttgttttgagtagt ttaggctggatctacatttttgacattgtggatggtaaacaagtagctcatgtggattta gcacttgctcaagaagatatgtgtaatgagcagcaacaggagccagccaagagttcttca tttacttcactgaaagtgtctcaggacctggatgttgtagtggtcgtgggcttctccaat actgcagttgctcttaacttgactttgtacttcaggcaatatccaggacatctgttatgt gaaaaaactctacaagacagccctattgaaggtcccaaggggatagatgaagatgatcct gttaattctgactacaacatgaaactgaccaagttttccttccgaattgataggtcttgg aaagcccagctgtcatcattgaatgaaacaataaagagctccaagctgggaggttcctgc tgtgctccctggttccaggatatttcgcatctggagtcccctgaatctggtaaccgcagt accagtgtgtcagactgggccttcattccacaggatgtgacatgtagcccatgtaatttt ccacagaaaggccctgccaggaccagtgatccaggaagagtgtggaaaaggatgcacatc agggaacaggaggagccccttgagcttacttgtgtgtctgtgacaggcttcactgcactg tttacttgggcaggggaaagcacaggctggaccattgtcctgtgggacttggaaacccag agcacgcagtgtttttcactgggcaaaaaatgtattcctgtagacagtggtggagtccag cagctgtgcctcgtcttgacagaaagtggactctctctgattttgtttggtttgactcaa gaggaatttttaaataggctgatgatccacggaagtgccagtactgtggactctctttgt catctcaatggttgggggcggtgttccatccccatacatgcgctagaggcaggaatagaa aatcatcagctggacacagtagatttctttttaaagagcaaagaaaatcttttgactcca tcctcaaaatcttctgtacctgatcagtttgatcactttgcatcccatttatatttaaaa catgtggaagagctgacaccagcattggatttactttgctcagcaattagagaaaatgat tctgagacccaaagcaaacacttttcagaacagttacttaaccttacactatcttttctt aacaaacaaataaaggagctttttattcacattgaagagctagatgaacatctacagaaa ggagtggacattttgaccagctacattgatgaacttcgaaccttcatgataaagtttccc tggaagctaacagatgctatagatgaatatgatgtaaatgaaaatgtccccaaagtaaag gagagcaatatatgggagaaactcagtgttgaggaagttattgccaatgccattttaaac aacaaaataccagaggcacaaactttcttcaggattaacagtcattctgctcaaagactt gaggagttgattagaataggcctagatttggtctttgacagtttgaaaaagaacaacatg gaggaagcctctgagcttttgaagaatatgggctttaatgtaaaagaccagttgctcaag atatgcttctatacagctgataaaagcgtacgggactttctggttgaaatttttaaagaa aaaaattatttttctgaaaaagagaaaaggactgtagactttgtgcatcaagttgagaag ttttattcaggacatttacaagaaaatatacagatccagtctttacccaggtattggata aaggaacaagatttttccaagcacaagtctgttttggactcattcctaaaatatgatcat aaagataaacttaacaagcaagatcataggattgtgttaaattgggctcagtggtggaat cagccaacacaagaatccatccttctcccctggataaatccagaaggatataactcgtat tctcctgaaggcctctggagatacctcacagcacaccatgattggcccagcattatcctg tggattggagaatttcagacccagagtagttatgcttcacttgagcagaataaatggcca cctctgactgttgatgttgttgatcagaatacttgttgcaacaactacatgaaaaatgaa attttagataagctggccaggaatggaatttttcttacatctgagttagaagactttgaa ctcttccttgtcagactaaaccgtgttgggggtgtcatgcaggatgccctcgctcttcaa aactataggtccaaagaaggatgggatttccactctcacttcattctctattgtttggaa cacagtctacagtatcttctttatgtctatcttgaccattacaaacttagtcctccaaat tgtccttttttgggaaaaaaagaattacatgaagctcacccttggtttgaatttttagtt cagtgtcgacaagtttccagtaatttaacagatcccagactgatcttccaggctagcctt gcaaatgctcagatactgattcccagcaaccaggccagtgtcagcagtatgctattggaa ggacataccctcctagcccttgctaccacaatgtatgcccctgggggcgtcagccaggtt gttcagaatggagaaaatgagaactctctgaagaaagtagatccccagctactgaagatg gcattaactccttacccaaagcttaaagctgctctgttcccacagtacaccgcccctagt gtcctgcctcccgacattacactctaccacctcattcagtcattgttgccctttgatcct agcagattgtttggctggcaatctgccaacacattggctataggagatgcagcgagtcag ctcccacatttctctagccctgacctggttaataaatacgctgtagtagaacgtctgaat tttgcttattatttacatcatgggcggccatcatttgcatttggtacttttctggttcag gaattaaccaagagcaagacccccaagcagctgatccagcaagtcggccatgaagcctat gttttagggctctcctgcttccacatatcttcgataggagccgcctgtgtatgcttctta gaattgcttggtctcgacagcctcaagctcagagttgatatgaaagtggccaatataatt ttgaactacaagtgtggaaatgaagatgctccgtacaactctatcagagagtctctaact gaaaaactgtctaaacttgctctgggtgaaagggcaaccatcgaagagttacttgttctc ttagaagaaggcatatggagcaacattcagcagcagcaaatacagaggttatccagtgaa tccagcagccagtgggcattagtggtacagttctgcaggctccacaatataaaaccgagc acatcttaccttagagaatgtgccagagcaaatgactggttacagtttattattcatagc cagctccataatcaccacccagaggaggtgaaatatcttctccagtatttcagccctgtt cttcaggaccacttaagactggcttttgagaacttgccctcagtgtccaactccagaatg gacagtgaccaagtctgcaacaggtcctcacaggaactccagagacacaaagaagagatg acagatttctttcagattctgcttcagtgttcagaggtgccagactcctggtgctggctc ctgggagaagcagtgagacaaaaggccccaatcctcagtgtcctggcctcatgtctccag gatgccagtgctgtctcttgtctctgtgtctggatcatcgcctctgtggagccccacgtt gcagctgaagcagtgggaccccttcaggactcagcggagggccacgtctggggcctggag gacctctccgtcatctggaggacattgctaacaaggcagaagatcaggactctcatcaga ggtttccagcttttctttaaggattccccactcctgttgatgatggagatgtatgaactc tgtatgttcttcaagaattataaggaggctgaagctaaacttgtggagttccagcagagc cttgaaactcttgagacagcagccacaagggtccccactgccatccctgcgccatggctg aaggagcacgtgtgttttcttttgaagctcatgctgcagcagtgtagcacccagtatgag ctggggaggctcttacagctgtttgttggaatagagcatctcttctctgatggtccagat gtgaagaagctgtgtgtccttagtcagattttgaaggatacacccatagccattaatcgt gcaatcattactagctacagccttgagaattttcagcgtgaatgtaggtcagttttggaa aaactggagacagacggactctttgctttggccaggagggtagcagaactagctgggcta cctgtggacgacttggtaattgaagagataacacaggaaatgcagaccttaaagcacgtt gaccagtggtccctgaaacaagcacgaattgacttctggaaaaaatgtcatgagaatttt aagaaaaattccgtttccagcagagcagcttcttcttttttctcagcccaggccctgtgg gcaggtgagtgccccgctgcagggggtcccagcagcgccgaggagcgccacctgctgctc acgctggcagggcactggctcgcccgggaggaccccgtgcctttggaggacctggagggc ctggagaagcagatctggctctgccgtgtcgcccagcacaccctcagggggagccaggag gaaggagggcccagagcgcctcagcaggcctcagctggaggtgaactttcctttgatggc ttagccagtgagttttcattctctaacttggctgttctgaacacatcaaaatacttagaa cttactggctttccatccagagatatttgtgacaatgaactgaactggaaggagcaggca tcccttaactgtttgatcgggcgcctgctggatgacggctgtgtgcacgaagcaagccga gcgtgccggtattttcgtttctatcaccaagacgtcgccttggtgttgcactgcagagct ctggcttcaggggaggctagtgtggacgacctgcacccggagatcctcgcgcttttacga agtactgagcttcctgaggaagaagaggaagctggtatccccctaaggaaagtccagagc acttccagtctggacagttggtcgttagtgatgctgccccccgcagacgaagtggtgacg aacctggaaactctgacaagcaagtgcctccatgggaagaactactgccggcaggtcctc tgtctctatgagctcgccaaggagctgggctgttcctacgcagacgtcgctgcccaggat ggtgaggccgtgctccgggccatcttggcttctcagcagcctaatcgatgcaagcgagct caagccttcatcagcacccagggcctcaggccagacacagtggctgaacttgtggctgaa gaggtgacccgggagctgctgacaccgtcggagggaacaggacacaggcaggtgttcgcc ccagcagaggagagccagacgtttcttcagctgactgctttgtgtcaagaccgcaccttg gtgggcatgaagctgttggagaagatttcctctgttccccacggggagctgtcttgcacc acagagctgctgatcctggctcatcactgcttcacactgacatgccatatggagggcatc atgcgtgtcctgcaggccgcccggctgctcaccgacaaccacttggcccccagtgaggag tacgggctggtggtgcgcctcctcactggcatcggaaggtacaatgagatgacatacata tttgatttgctgcataaaaagcactactttgaagtgctcatgaggaagaagctggaccct agtggcaccctgaagacggccctgctggactacatcaagcgctgccgccctggggacagc gagaagcacaacatgatcgcgctgtgcttcagcatgtgccgcgagatcggcgaaaaccac gaggcagctgcctgcatccaactgaaactgatcgagtctcagccctgggaggactgtgtc aaggatgggcagcgactgaagcagctgctgctgaaggccctgactctgatgctggacgca gcagagagttatgccaaggactcctgcgtgcgccaggccctgcactgtcaccggctcacc aagttgataacgctgcagattcactttctgaacactggccagaacacgatgctcatcaac ctgagccgccacaggctgatggactgtatcacggcactgcctcggttctaccaggcttcc attgtggcagaggcctatgactttgttcctgactgggctgaaattctctatcaacaagtg attcttaaaggagactttaattacttggaagaatttaagcagcaaaggttattaagaccc agtgtatttgaagagatttcaataaaatgtaaacatcatcagcctacagaatttgttctg aaaaacctgaagaagttactcacatattgtgaagacatctacttgtattacaagctggca tacgaacacaaactttacgatgttgtaaatgtgcttctgaaggaccctcagaccggctgc tgtctaaaggacatgctggccggttag

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