Bos mutus (wild yak): 102283440
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Entry
102283440 CDS
T02919
Symbol
SPG11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
bom
Bos mutus (wild yak)
Pathway
bom05014
Amyotrophic lateral sclerosis
bom05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
bom00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
102283440 (SPG11)
05022 Pathways of neurodegeneration - multiple diseases
102283440 (SPG11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bom03400
]
102283440 (SPG11)
DNA repair and recombination proteins [BR:
bom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
102283440 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
102283440
NCBI-ProteinID:
XP_005888673
LinkDB
All DBs
Position
10:82857271..82933870
Genome browser
AA seq
2428 aa
AA seq
DB search
MAAEQGALPVLLVPVPAEAVGRLGSRAQLHREQAALGSLTAAGSLHVLPLAPGGRGGGDC
RLEGCFRQFVWEDSHHSGTPNNKPRLLALTENYELLICEFNLEHGRCDATILYSYSEETL
QKLVEDQNISISLLSLRILSFHNNTSLLFINKCVVLHVMFPERDAEIRVLSCCTLPLPAQ
AVDRIIDTQLCRGILFVLSSLGWIYIFDIVDGKQVAHVDLALAQEDMCNEQQQEPAKSSS
FTSLKVSQDLDVVVVVGFSNTAVALNLTLYFRQYPGHLLCEKTLQDSPIEGPKGIDEDDP
VNSDYNMKLTKFSFRIDRSWKAQLSSLNETIKSSKLGGSCCAPWFQDISHLESPESGNRS
TSVSDWAFIPQDVTCSPCNFPQKGPARTSDPGRVWKRMHIREQEEPLELTCVSVTGFTAL
FTWAGESTGWTIVLWDLETQSTQCFSLGKKCIPVDSGGVQQLCLVLTESGLSLILFGLTQ
EEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENHQLDTVDFFLKSKENLLTP
SSKSSVPDQFDHFASHLYLKHVEELTPALDLLCSAIRENDSETQSKHFSEQLLNLTLSFL
NKQIKELFIHIEELDEHLQKGVDILTSYIDELRTFMIKFPWKLTDAIDEYDVNENVPKVK
ESNIWEKLSVEEVIANAILNNKIPEAQTFFRINSHSAQRLEELIRIGLDLVFDSLKKNNM
EEASELLKNMGFNVKDQLLKICFYTADKSVRDFLVEIFKEKNYFSEKEKRTVDFVHQVEK
FYSGHLQENIQIQSLPRYWIKEQDFSKHKSVLDSFLKYDHKDKLNKQDHRIVLNWAQWWN
QPTQESILLPWINPEGYNSYSPEGLWRYLTAHHDWPSIILWIGEFQTQSSYASLEQNKWP
PLTVDVVDQNTCCNNYMKNEILDKLARNGIFLTSELEDFELFLVRLNRVGGVMQDALALQ
NYRSKEGWDFHSHFILYCLEHSLQYLLYVYLDHYKLSPPNCPFLGKKELHEAHPWFEFLV
QCRQVSSNLTDPRLIFQASLANAQILIPSNQASVSSMLLEGHTLLALATTMYAPGGVSQV
VQNGENENSLKKVDPQLLKMALTPYPKLKAALFPQYTAPSVLPPDITLYHLIQSLLPFDP
SRLFGWQSANTLAIGDAASQLPHFSSPDLVNKYAVVERLNFAYYLHHGRPSFAFGTFLVQ
ELTKSKTPKQLIQQVGHEAYVLGLSCFHISSIGAACVCFLELLGLDSLKLRVDMKVANII
LNYKCGNEDAPYNSIRESLTEKLSKLALGERATIEELLVLLEEGIWSNIQQQQIQRLSSE
SSSQWALVVQFCRLHNIKPSTSYLRECARANDWLQFIIHSQLHNHHPEEVKYLLQYFSPV
LQDHLRLAFENLPSVSNSRMDSDQVCNRSSQELQRHKEEMTDFFQILLQCSEVPDSWCWL
LGEAVRQKAPILSVLASCLQDASAVSCLCVWIIASVEPHVAAEAVGPLQDSAEGHVWGLE
DLSVIWRTLLTRQKIRTLIRGFQLFFKDSPLLLMMEMYELCMFFKNYKEAEAKLVEFQQS
LETLETAATRVPTAIPAPWLKEHVCFLLKLMLQQCSTQYELGRLLQLFVGIEHLFSDGPD
VKKLCVLSQILKDTPIAINRAIITSYSLENFQRECRSVLEKLETDGLFALARRVAELAGL
PVDDLVIEEITQEMQTLKHVDQWSLKQARIDFWKKCHENFKKNSVSSRAASSFFSAQALW
AGECPAAGGPSSAEERHLLLTLAGHWLAREDPVPLEDLEGLEKQIWLCRVAQHTLRGSQE
EGGPRAPQQASAGGELSFDGLASEFSFSNLAVLNTSKYLELTGFPSRDICDNELNWKEQA
SLNCLIGRLLDDGCVHEASRACRYFRFYHQDVALVLHCRALASGEASVDDLHPEILALLR
STELPEEEEEAGIPLRKVQSTSSLDSWSLVMLPPADEVVTNLETLTSKCLHGKNYCRQVL
CLYELAKELGCSYADVAAQDGEAVLRAILASQQPNRCKRAQAFISTQGLRPDTVAELVAE
EVTRELLTPSEGTGHRQVFAPAEESQTFLQLTALCQDRTLVGMKLLEKISSVPHGELSCT
TELLILAHHCFTLTCHMEGIMRVLQAARLLTDNHLAPSEEYGLVVRLLTGIGRYNEMTYI
FDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENH
EAAACIQLKLIESQPWEDCVKDGQRLKQLLLKALTLMLDAAESYAKDSCVRQALHCHRLT
KLITLQIHFLNTGQNTMLINLSRHRLMDCITALPRFYQASIVAEAYDFVPDWAEILYQQV
ILKGDFNYLEEFKQQRLLRPSVFEEISIKCKHHQPTEFVLKNLKKLLTYCEDIYLYYKLA
YEHKLYDVVNVLLKDPQTGCCLKDMLAG
NT seq
7287 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggagcagggcgcgctgcccgttttgttggtgccggtccccgccgaggccgta
gggcgactggggtctcgggcgcagctgcacagagagcaggcggccctggggagtctgacg
gccgcaggcagccttcacgtacttcccttggcgccgggcggccgaggcgggggcgactgc
cgcctggaaggctgttttcggcagtttgtgtgggaggattctcatcacagcgggacacca
aacaacaagcccagactgcttgctcttactgaaaattatgaactgctcatctgtgaattt
aatttggaacatggaagatgtgatgcaaccattttatatagctatagtgaagagacattg
cagaagcttgttgaagatcaaaatatcagtatttccttattatctttgaggattctgtca
tttcacaacaacacatcattattgttcatcaacaaatgtgttgtcttacatgttatgttt
cctgaaagagatgctgagattagggtactcagctgttgcacattacccttacctgcgcag
gcagtggacaggattattgacacgcagctctgcagaggaattctctttgttttgagtagt
ttaggctggatctacatttttgacattgtggatggtaaacaagtagctcatgtggattta
gcacttgctcaagaagatatgtgtaatgagcagcaacaggagccagccaagagttcttca
tttacttcactgaaagtgtctcaggacctggatgttgtagtggtcgtgggcttctccaat
actgcagttgctcttaacttgactttgtacttcaggcaatatccaggacatctgttatgt
gaaaaaactctacaagacagccctattgaaggtcccaaggggatagatgaagatgatcct
gttaattctgactacaacatgaaactgaccaagttttccttccgaattgataggtcttgg
aaagcccagctgtcatcattgaatgaaacaataaagagctccaagctgggaggttcctgc
tgtgctccctggttccaggatatttcgcatctggagtcccctgaatctggtaaccgcagt
accagtgtgtcagactgggccttcattccacaggatgtgacatgtagcccatgtaatttt
ccacagaaaggccctgccaggaccagtgatccaggaagagtgtggaaaaggatgcacatc
agggaacaggaggagccccttgagcttacttgtgtgtctgtgacaggcttcactgcactg
tttacttgggcaggggaaagcacaggctggaccattgtcctgtgggacttggaaacccag
agcacgcagtgtttttcactgggcaaaaaatgtattcctgtagacagtggtggagtccag
cagctgtgcctcgtcttgacagaaagtggactctctctgattttgtttggtttgactcaa
gaggaatttttaaataggctgatgatccacggaagtgccagtactgtggactctctttgt
catctcaatggttgggggcggtgttccatccccatacatgcgctagaggcaggaatagaa
aatcatcagctggacacagtagatttctttttaaagagcaaagaaaatcttttgactcca
tcctcaaaatcttctgtacctgatcagtttgatcactttgcatcccatttatatttaaaa
catgtggaagagctgacaccagcattggatttactttgctcagcaattagagaaaatgat
tctgagacccaaagcaaacacttttcagaacagttacttaaccttacactatcttttctt
aacaaacaaataaaggagctttttattcacattgaagagctagatgaacatctacagaaa
ggagtggacattttgaccagctacattgatgaacttcgaaccttcatgataaagtttccc
tggaagctaacagatgctatagatgaatatgatgtaaatgaaaatgtccccaaagtaaag
gagagcaatatatgggagaaactcagtgttgaggaagttattgccaatgccattttaaac
aacaaaataccagaggcacaaactttcttcaggattaacagtcattctgctcaaagactt
gaggagttgattagaataggcctagatttggtctttgacagtttgaaaaagaacaacatg
gaggaagcctctgagcttttgaagaatatgggctttaatgtaaaagaccagttgctcaag
atatgcttctatacagctgataaaagcgtacgggactttctggttgaaatttttaaagaa
aaaaattatttttctgaaaaagagaaaaggactgtagactttgtgcatcaagttgagaag
ttttattcaggacatttacaagaaaatatacagatccagtctttacccaggtattggata
aaggaacaagatttttccaagcacaagtctgttttggactcattcctaaaatatgatcat
aaagataaacttaacaagcaagatcataggattgtgttaaattgggctcagtggtggaat
cagccaacacaagaatccatccttctcccctggataaatccagaaggatataactcgtat
tctcctgaaggcctctggagatacctcacagcacaccatgattggcccagcattatcctg
tggattggagaatttcagacccagagtagttatgcttcacttgagcagaataaatggcca
cctctgactgttgatgttgttgatcagaatacttgttgcaacaactacatgaaaaatgaa
attttagataagctggccaggaatggaatttttcttacatctgagttagaagactttgaa
ctcttccttgtcagactaaaccgtgttgggggtgtcatgcaggatgccctcgctcttcaa
aactataggtccaaagaaggatgggatttccactctcacttcattctctattgtttggaa
cacagtctacagtatcttctttatgtctatcttgaccattacaaacttagtcctccaaat
tgtccttttttgggaaaaaaagaattacatgaagctcacccttggtttgaatttttagtt
cagtgtcgacaagtttccagtaatttaacagatcccagactgatcttccaggctagcctt
gcaaatgctcagatactgattcccagcaaccaggccagtgtcagcagtatgctattggaa
ggacataccctcctagcccttgctaccacaatgtatgcccctgggggcgtcagccaggtt
gttcagaatggagaaaatgagaactctctgaagaaagtagatccccagctactgaagatg
gcattaactccttacccaaagcttaaagctgctctgttcccacagtacaccgcccctagt
gtcctgcctcccgacattacactctaccacctcattcagtcattgttgccctttgatcct
agcagattgtttggctggcaatctgccaacacattggctataggagatgcagcgagtcag
ctcccacatttctctagccctgacctggttaataaatacgctgtagtagaacgtctgaat
tttgcttattatttacatcatgggcggccatcatttgcatttggtacttttctggttcag
gaattaaccaagagcaagacccccaagcagctgatccagcaagtcggccatgaagcctat
gttttagggctctcctgcttccacatatcttcgataggagccgcctgtgtatgcttctta
gaattgcttggtctcgacagcctcaagctcagagttgatatgaaagtggccaatataatt
ttgaactacaagtgtggaaatgaagatgctccgtacaactctatcagagagtctctaact
gaaaaactgtctaaacttgctctgggtgaaagggcaaccatcgaagagttacttgttctc
ttagaagaaggcatatggagcaacattcagcagcagcaaatacagaggttatccagtgaa
tccagcagccagtgggcattagtggtacagttctgcaggctccacaatataaaaccgagc
acatcttaccttagagaatgtgccagagcaaatgactggttacagtttattattcatagc
cagctccataatcaccacccagaggaggtgaaatatcttctccagtatttcagccctgtt
cttcaggaccacttaagactggcttttgagaacttgccctcagtgtccaactccagaatg
gacagtgaccaagtctgcaacaggtcctcacaggaactccagagacacaaagaagagatg
acagatttctttcagattctgcttcagtgttcagaggtgccagactcctggtgctggctc
ctgggagaagcagtgagacaaaaggccccaatcctcagtgtcctggcctcatgtctccag
gatgccagtgctgtctcttgtctctgtgtctggatcatcgcctctgtggagccccacgtt
gcagctgaagcagtgggaccccttcaggactcagcggagggccacgtctggggcctggag
gacctctccgtcatctggaggacattgctaacaaggcagaagatcaggactctcatcaga
ggtttccagcttttctttaaggattccccactcctgttgatgatggagatgtatgaactc
tgtatgttcttcaagaattataaggaggctgaagctaaacttgtggagttccagcagagc
cttgaaactcttgagacagcagccacaagggtccccactgccatccctgcgccatggctg
aaggagcacgtgtgttttcttttgaagctcatgctgcagcagtgtagcacccagtatgag
ctggggaggctcttacagctgtttgttggaatagagcatctcttctctgatggtccagat
gtgaagaagctgtgtgtccttagtcagattttgaaggatacacccatagccattaatcgt
gcaatcattactagctacagccttgagaattttcagcgtgaatgtaggtcagttttggaa
aaactggagacagacggactctttgctttggccaggagggtagcagaactagctgggcta
cctgtggacgacttggtaattgaagagataacacaggaaatgcagaccttaaagcacgtt
gaccagtggtccctgaaacaagcacgaattgacttctggaaaaaatgtcatgagaatttt
aagaaaaattccgtttccagcagagcagcttcttcttttttctcagcccaggccctgtgg
gcaggtgagtgccccgctgcagggggtcccagcagcgccgaggagcgccacctgctgctc
acgctggcagggcactggctcgcccgggaggaccccgtgcctttggaggacctggagggc
ctggagaagcagatctggctctgccgtgtcgcccagcacaccctcagggggagccaggag
gaaggagggcccagagcgcctcagcaggcctcagctggaggtgaactttcctttgatggc
ttagccagtgagttttcattctctaacttggctgttctgaacacatcaaaatacttagaa
cttactggctttccatccagagatatttgtgacaatgaactgaactggaaggagcaggca
tcccttaactgtttgatcgggcgcctgctggatgacggctgtgtgcacgaagcaagccga
gcgtgccggtattttcgtttctatcaccaagacgtcgccttggtgttgcactgcagagct
ctggcttcaggggaggctagtgtggacgacctgcacccggagatcctcgcgcttttacga
agtactgagcttcctgaggaagaagaggaagctggtatccccctaaggaaagtccagagc
acttccagtctggacagttggtcgttagtgatgctgccccccgcagacgaagtggtgacg
aacctggaaactctgacaagcaagtgcctccatgggaagaactactgccggcaggtcctc
tgtctctatgagctcgccaaggagctgggctgttcctacgcagacgtcgctgcccaggat
ggtgaggccgtgctccgggccatcttggcttctcagcagcctaatcgatgcaagcgagct
caagccttcatcagcacccagggcctcaggccagacacagtggctgaacttgtggctgaa
gaggtgacccgggagctgctgacaccgtcggagggaacaggacacaggcaggtgttcgcc
ccagcagaggagagccagacgtttcttcagctgactgctttgtgtcaagaccgcaccttg
gtgggcatgaagctgttggagaagatttcctctgttccccacggggagctgtcttgcacc
acagagctgctgatcctggctcatcactgcttcacactgacatgccatatggagggcatc
atgcgtgtcctgcaggccgcccggctgctcaccgacaaccacttggcccccagtgaggag
tacgggctggtggtgcgcctcctcactggcatcggaaggtacaatgagatgacatacata
tttgatttgctgcataaaaagcactactttgaagtgctcatgaggaagaagctggaccct
agtggcaccctgaagacggccctgctggactacatcaagcgctgccgccctggggacagc
gagaagcacaacatgatcgcgctgtgcttcagcatgtgccgcgagatcggcgaaaaccac
gaggcagctgcctgcatccaactgaaactgatcgagtctcagccctgggaggactgtgtc
aaggatgggcagcgactgaagcagctgctgctgaaggccctgactctgatgctggacgca
gcagagagttatgccaaggactcctgcgtgcgccaggccctgcactgtcaccggctcacc
aagttgataacgctgcagattcactttctgaacactggccagaacacgatgctcatcaac
ctgagccgccacaggctgatggactgtatcacggcactgcctcggttctaccaggcttcc
attgtggcagaggcctatgactttgttcctgactgggctgaaattctctatcaacaagtg
attcttaaaggagactttaattacttggaagaatttaagcagcaaaggttattaagaccc
agtgtatttgaagagatttcaataaaatgtaaacatcatcagcctacagaatttgttctg
aaaaacctgaagaagttactcacatattgtgaagacatctacttgtattacaagctggca
tacgaacacaaactttacgatgttgtaaatgtgcttctgaaggaccctcagaccggctgc
tgtctaaaggacatgctggccggttag
DBGET
integrated database retrieval system
