Bos mutus (wild yak): 102285924
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Entry
102285924 CDS
T02919
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bom
Bos mutus (wild yak)
Pathway
bom04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
bom00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102285924 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bom04147
]
102285924 (COL18A1)
00535 Proteoglycans [BR:
bom00535
]
102285924 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
bom00536
]
102285924 (COL18A1)
Exosome [BR:
bom04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102285924 (COL18A1)
Proteoglycans [BR:
bom00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102285924 (COL18A1)
Glycosaminoglycan binding proteins [BR:
bom00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102285924 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102285924
NCBI-ProteinID:
XP_070234177
LinkDB
All DBs
Position
1:complement(155345902..155398441)
Genome browser
AA seq
1792 aa
AA seq
DB search
MAPDPSSSRGHHGLLLLACCLSTAQADLFSWLWPGNSAWPIAAPASKPPDSSPVWPTEDT
TTHMAPRDAPTDWWKVSASPTAPLGRPEVGQGQTPTGPTASTVSLDPKEENIAGVGAKIL
NVAQGIRSFVQLWDNAKDTTPAESSARAGTLAPATPTDPLSTTPGEGSTRAETPPPTDTM
DALSTPGPSITPQDSGTTLQLSTTALSSPDTQRTEAGTLPVPTQPPPSPGRPWFRESLVS
PTPGRSSLSSVPARAPPRGSQLPLGRPLQLDGEGLLLAAARPGQQHADDRRPMPPLPPLV
TGSLGKHTALWALSSDPPAKLSHVAVSALTVDSGAWAPHVANSAGPGLANKSTLLGAAEL
AATEQPVPTTAGRCLPLLPSLALCGHLGIRRSWWPNHLHHTSREEVQAAVPAWGALLRTH
CHRFLAWFFCLLLAPPCGPGLPPGLPPCRQFCEALEDACWSHLDGRGLPLPCASLPARED
GHCVFIGPPADEEVVEVGLQQLLGEPPPWQVAMVHDPDVGSAYEFGEDGSGGGQAARRLL
PGTFFQDFSLLVRVRPASARAGVLFAVTDPAQAVVSVGVKLTAARGGRQHVQLLYTEPGA
THTRTAASFELPALDGRWTRLALSVDGAYARLFVDCKEVQGQPLAHSLHDLQLEPDARLF
VAQAGGADPEKFQGLISELRLRRDPQVSPRQCQDEDEDDDDDGASGDLGSGLVETQEHLR
EELGAPLGPRLPEAPPVTSPPLAGVGNEEDLRTEEVEESTTASSLGAQTLPSLGTVGTWD
ESVWSPGSSVKERGLKGQKGEPGAQGPPGPIGPQGPAGPAIDSHEAQPVSGPQGPPGPPG
PPGKDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGP
PGPPGPSFKPDRLTFIDMEGSGFGGDLESLRGPRGFPAPGPPGVPGLPGEPGRFGMNSSD
VPGPAGLPGVPGRDGPPGRPGPPGPPGTPGKDGQPGLTGQKGSLGEAGAPGPKGSKGDPG
PVGAPGEHGLAGAPGPAGPPGPPGPPGPPGPGFAAGFDDMEGSGSPLWSTARGAEGLKGP
PGTPGVKGDPGALGPPGSKGEVGADGAPGLPGLPGREGAAGPQGPKGEKGTQGEKGDPGK
DGVGQPGLPGPPGPPGPVVYVSEQDRVLASVPGPEGRAGFAGFPGPAGPKGDLGAKGQQG
IPGPKGEKGEPGTFFGPDGRALTPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRP
GMNGLKGEKGEPGDASVGFGMRGPAGPPGPPGPPGPPGTPVYDSNAFVDSGRPGPPGLPG
HQGPSGPKGDKGDVGPPGPPGQFPFDLLQLGAEMKGEKGDRGATGQKGERGEPGGGGFFG
SGVPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGPQGPPGPPGPPGPPGPPS
FPGPYRQTISVPGPPGPPGPPGPPGSMGTSSGGSTGLGFQQVRVWATYQMLVDQVPQVPE
GWLIYVADREELYVRVRNGFRKVLLEAHVPLPHGTDNEVAVLQPPLVQLHEGNPYPRREV
PHPTARSWRADDILASPPRLPHPQPYPGAPHHGAYAHLRPVPPTASPSHTHHDFQPVLHL
VALNSPQSGGLRGIRGADFQCFQQARAAGLAGTFRAFLSSRLQDLYSIVRRADRATLPVV
NLRDEVLFPSWEALFSGSEGQLKPGARIFSFDGRDVLQHPTWPQKSVWHGSDPSGRRLTE
SYCETWRTDSRAATGQASSLLAGRLLEQKAAGCHNAFIVLCIENSFMTSSSK
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagcagccgcggccaccacggcctcctgctgcttgcctgctgc
ctctcgaccgcccaggctgacctgttctcctggctatggcctgggaacagtgcctggccc
atagctgcgccagcctccaagcccccggacagctcacctgtgtggcccacggaggatacc
accacgcacatggccccccgggatgctcccaccgactggtggaaagtctctgccagcccc
acagcccctctggggaggccggaggtggggcagggccagacccccactggccccacggcc
tccaccgtgagcctggacccaaaggaggaaaacatcgccggcgtcggagccaagatcctg
aacgtggctcagggcatccggagcttcgtccagctgtgggacaacgctaaggacaccacc
cctgccgagagctctgccagggcagggacgctggcccccgcgacccccacagaccccctt
tctaccaccccgggcgagggctccaccagggcagagacgccgccccccacggacaccatg
gacgccctctccacccctggaccctccatcaccccccaggacagtgggaccaccctccag
ctgagcaccacggccctgagctctccagacacccagaggactgaggccggcaccctgcca
gtgcccacccagccgccaccctcccccggcagaccctggttcagggagtccttggtatcg
ccgaccccaggtagatcttctctttcctccgtgccggcccgggcgcctccccggggaagc
cagctgcctctcgggcggcccctgcagctggacggtgaaggactcttgcttgcagcagcc
cgtcccggccagcagcatgctgacgaccgcaggcccatgccgcctctgcctcccctggtg
acgggttccctgggcaagcacactgccctctgggctctctcctctgacccccctgccaaa
ctgtctcatgtcgcagtctcagctctaactgtggacagtggtgcttgggctccccacgtg
gctaattctgcggggcctggtcttgctaacaagtccacactgctcggggctgctgagctg
gctgccaccgagcagcctgtccccaccaccgctggccgctgcctgcccctgctgccctcc
ctggctctctgcggccacctgggcatcagacgctcctggtggcccaaccacctccaccac
acaagtcgggaggaggtgcaggccgcggtcccagcctggggggcactgctccggacccac
tgccaccgcttcctggcctggttcttctgcctgctgctggcacccccctgcgggcccggc
ctgccgcccggcctgccaccctgtcgccagttctgcgaggccctggaggacgcatgctgg
agccacctggacgggcgcgggctgccactcccctgtgcctcgctcccggcccgcgaggac
gggcactgcgtgttcatagggccaccagcagacgaagaggtcgtggaggtagggctccag
cagctgctcggggagcccccgccctggcaggtggccatggtgcacgaccccgacgtgggg
tccgcctatgagttcggcgaggacggcagcggtggaggccaggcggcccggagactcctg
cctggcacgttcttccaggacttctcgctgcttgtgcgtgtgcggccggcctcggcgcgc
gcgggcgtgctctttgcggtcacagacccggcgcaggcagtggtctcggtgggcgtgaag
ctgacggcggcacgtggggggcggcagcacgtgcagctgctgtacacggagccgggagcc
acccacacacgcacagccgccagcttcgagctgcccgcgctggatggtcgctggactcgc
ctggcactcagcgtggatggcgcctatgccaggctcttcgtggactgtaaggaggtccag
ggccagcccctggcgcactcgctgcacgacctgcagctggagccggacgcccgcctcttc
gtggcccaggccggtggagcagaccctgaaaagttccagggtctgatctcagagctgagg
ttgcgcagggatcctcaggtgagcccccggcagtgccaggatgaggacgaggatgacgat
gatgatggggcgtctggagacctgggcagcgggctcgtggagacccaggagcatctccgg
gaggagttgggtgcgcccctggggcccaggctccccgaggctcctccggtcacttctcca
cccttggccggagtcggcaacgaggaggacttgagaactgaggaagtagaggagtcaacc
acagcgtcttcattaggagctcagaccctccccagcttgggcacagttggcacgtgggat
gagagtgtttggagccctgggagcagcgtgaaagagcgaggcctgaaggggcagaaggga
gagcctggcgctcagggcccccctggccccatcggcccccagggtcctgcaggcccagcc
atagacagccatgaggcacagcctgtttctggaccacagggaccccctgggcccccggga
cccccggggaaggacggcacccctggaagggacggtgagcctggtgatcctggtgaagac
gggaagcccggggacactgggccacagggcttcccagggaccccaggagacgtgggcccc
aagggcgagaagggggatcctggagtcggaccgaggggacccccaggaccccaggggcct
ccggggcccccagggccctccttcaaacccgacaggctgaccttcatcgacatggaggga
tccggttttggcggcgacctggagagcctccgcggccctcgtggcttccccgccccgggg
ccccctggcgtcccaggcctgccaggagagccaggccgcttcgggatgaacagctcggac
gtccctggacccgcaggcctgcccggcgtgcctgggagggacgggccgcctgggcgtcca
gggcccccgggacccccaggtactccaggaaaagacggacaaccaggactgactggacag
aaaggcagcctcggtgaggcaggcgccccaggacccaagggaagcaagggagaccctggc
cccgtcggcgctcctggggagcatggcctggcaggagcccctggacccgcaggcccacca
gggccccctggccccccggggcccccgggcccaggattcgccgcagggtttgacgacatg
gaaggctccgggagccccttatggtcaacagcccgaggtgccgaggggctgaagggaccg
cctggcacgcccggagtcaagggggatcctggagctctggggccaccagggagcaaggga
gaagttggagcagacggagcaccgggcctccccggcctcccgggcagagagggtgcagct
ggaccccagggaccaaaaggagaaaaagggactcagggagagaaaggagacccagggaag
gatggagtggggcagccaggactcccgggaccccccggacccccagggcctgtcgtctac
gtgtcggagcaggatagagtgctggcgagcgtgccaggccccgagggccgtgcgggcttc
gctggcttccccggaccagccgggccaaagggagacctgggcgccaaaggccagcagggc
atcccgggacccaagggtgagaagggagagccgggcacattcttcggccccgatggcaga
gcactgacccccgcccagaaaggagccaagggtgagcctggcttccgaggacctccgggt
ccgtatgggcggcctgggcacaagggagagatcggattccctggacggccggggcgtccc
gggatgaacgggctgaaaggggagaagggggagccgggggacgccagcgtgggattcggc
atgaggggtccagctggcccacctgggcctccggggcccccaggccctcccgggactcct
gtctacgacagcaatgcatttgtggactctggccgccctggacccccaggattgccaggg
caccaggggccttctggacccaagggcgacaaaggagacgtgggcccgcccggaccgcca
gggcagttcccgtttgacctcctccagctgggtgccgagatgaagggggagaagggggac
cgaggggccactgggcagaaaggagaaaggggtgagcccgggggcggaggattcttcggc
tccggtgtgcctggcccccccggcccgccaggctacccggggattccgggccccaaggga
gagagcatccgcggccagcccggccctccgggacctcagggaccccctggcattggctac
gagggaccccaggggcctcctgggccccccggacccccagggcccccgggacccccttcc
tttcctggcccctacaggcagaccatcagtgttcctggcccgccaggcccacctgggccc
ccaggaccccctggatccatgggcacttcttcagggggatccactgggctgggcttccag
caggtgagggtctgggccacgtaccagatgctggtggaccaggtgccgcaggtgccggag
ggctggctcatctacgtggccgacagggaggagctgtacgtccgggtccggaatgggttc
cggaaggttctgctggaggcccacgtgcccctcccccatgggacggacaacgaggtggcc
gtcttgcagcccccgctggtgcagctgcatgagggtaatccctacccccgccgggaggtt
ccacacccgacagcgcggtcctggcgggcggacgacatcctggccagtcccccgcgcctg
ccgcacccccagccctaccccggcgccccacaccacggcgcctacgcacacctccggccg
gtgccccccacggcctcgccctcccacacccaccacgacttccagccggtgctgcacctg
gtggcgctcaacagcccgcagtcgggcggcctgcgcggcatccgcggcgccgacttccag
tgcttccagcaggcgcgcgccgcggggctggccggcaccttccgcgcgttcctgtcctcg
cggttgcaggacctgtacagcatcgtgcgccgcgccgaccgcgccaccctgcccgtcgtc
aacctcagggacgaggtgctgtttcctagctgggaggccttgttctcaggctccgagggc
cagctgaagcccggcgcccgcatcttctccttcgacggcagagatgtccttcagcatccc
acctggccccagaagagcgtgtggcacggctcagaccccagcgggcgccggctgaccgag
agctactgcgagacgtggcggacggacagcagggcggccacgggccaggcctcctcgctg
ctggcgggccggctgctggagcagaaagccgccgggtgccacaacgccttcattgtcctc
tgcatcgagaacagcttcatgacctcctcctccaagtag
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