Bos mutus (wild yak): 102287527
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Entry
102287527 CDS
T02919
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bom
Bos mutus (wild yak)
Pathway
bom03030
DNA replication
bom03410
Base excision repair
bom03420
Nucleotide excision repair
bom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102287527 (LIG1)
03410 Base excision repair
102287527 (LIG1)
03420 Nucleotide excision repair
102287527 (LIG1)
03430 Mismatch repair
102287527 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bom03032
]
102287527 (LIG1)
03400 DNA repair and recombination proteins [BR:
bom03400
]
102287527 (LIG1)
Enzymes [BR:
bom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102287527 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
102287527 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102287527 (LIG1)
DNA replication proteins [BR:
bom03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102287527 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102287527 (LIG1)
DNA repair and recombination proteins [BR:
bom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102287527 (LIG1)
NER (nucleotide excision repair)
Other NER factors
102287527 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
102287527 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
102287527
NCBI-ProteinID:
XP_070243514
LinkDB
All DBs
Position
18:8003734..8031335
Genome browser
AA seq
1068 aa
AA seq
DB search
MPRAAARPGPCSRDAPRGLPPLFPPCLARWLPPDLRFPAGHSSIQSNSGSGLFPSVLCGR
ARPTSSPFQGVSRPGDYNSQRPPRDGGSDVARPLPSTRPRPRPPKSAREVGGAKLGLRGR
SRRDSQDSGARAWREKLVTSGEEEWGENSDTIMQRSIMSFFQPEKEGKAKKPEKETSKSI
RETESPPKVALKERNRVVSEGDSPVKRPGRKATRVLGSEGEEEEEEAPTTPRSQKPASDS
PQASPPSPVTLPESSPSRSKPSPAVASPSGIPKRRTARKQLPKRTFQDVLKEQGEDKDPE
TKKKKEEEAETPTESLPEPEGGDKEEVEGGDQPMTPPEPRKTSTESPTESVSEPGVTVKQ
EPQEDGQAQPPPKTPKTLSSFFSPRKPAVKKEAKEEGPGALRKDETKGHVDPASYNPAKN
NYHPIEDACWKAGQRVPYLAVARAFEKIEEVSARLRMVETLSNLLRSVVALSPADLLPVL
YLSLNRLGPPQQGLELGIGEGILLKAVAQATGRQLESVRAEVAEKGDVGLVAESSRSTQR
LMLPPPALTAAGVFAKFRDIAQLAGSASTTKKIDVIKGLFVACRHSEARFIARALSGRLR
LGLAEQSVLAALAQAVSLTPPSQECPPAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVP
DLEQIVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDG
QRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQ
IQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEG
EFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLE
GVGDTLDLVVIGAYLGKGKRAGRYGGFLLASYDEESEEFQAICKLGTGFSDEELEEHHQR
LQALVLPTPRSYVRADGAVAPDHWLDPSDVWEVKCADLSLSPIYPAARGLVDSEKGISLR
FPRFIRVREDKKPEQATTSAQVAGLYKKQSQIQNQQGAEPDSEQEEFY
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgccgcggcccggcccggcccttgctcccgggatgccccgcgcggcctcccg
cctctcttcccgccgtgcctcgcgcggtggctcccaccagatctccgttttcccgctggt
cactcctcaatccagagcaacagtggctcggggctgtttcccagcgtgctctgcgggagg
gctcgccccacttcatcccctttccagggagtctcacgaccgggagactacaactcccag
cgtcctcctcgcgacggcggctcggacgtcgcccggcccctcccctcgactcggccccgc
ccccgcccgccgaagtctgcgcgcgaagtcggtggcgcgaaattgggactgcggggtcgc
tccaggagagactctcaggacagcggcgcgcgggcctggcgcgagaaactggtgaccagc
ggagaggaggagtggggagagaattctgataccatcatgcagcgaagtatcatgtcattt
ttccagcccgaaaaagagggcaaagcgaagaagccggagaaggagacatccaagagcatc
agagaaacggagtcccctccgaaggtggcgctgaaggagcggaatcgagtggtgtctgag
ggtgactctccagtgaagaggccagggaggaaggcgacccgggtcctgggcagcgagggc
gaggaggaggaagaggaagcccccaccacccccagaagccagaagcctgcttcagactct
ccacaggcctcgcctcccagtcctgtcacactgcctgagagcagcccttcccgctccaaa
ccctccccagcagttgcatccccatcagggatcccgaagcgtcgcacggcccggaagcag
cttcccaaacggacatttcaagatgtcctgaaagagcagggcgaggacaaggacccagaa
actaagaagaagaaggaggaagaagcggagacaccaacagaaagcctcccagagcctgaa
gggggcgacaaggaggaagtggaaggcggggaccagcccatgacgccccctgagccccgg
aagacctccacagagtccccgacagaaagcgtatcagagcctggggtgacggtgaagcag
gaaccacaggaggatggccaggctcaaccgccccccaaaactccaaagaccctcagcagt
ttcttctccccccggaagccagctgtcaaaaaagaagcgaaagaagaaggacctggtgct
ctgagaaaggacgagaccaagggacacgtggacccagcgagctataatcctgccaagaac
aactaccaccccatcgaagatgcctgctggaaggcgggccagagggttccttatctggct
gtggcccgggcgttcgagaagatcgaggaggtctctgctcggctccggatggtggagacg
ctgagcaacctgctgcgctccgtggtggccctgtcacctgctgacctcctgcccgtcctc
tacctgagcctcaaccgcctggggccgccccagcagggcctggagctcggcatcggagag
ggcatcctcctcaaggcagtggcccaggccacgggtcggcagctggagtccgtccgggcc
gaggtggccgagaagggtgatgtggggctggtggccgagagcagccgcagcacccagagg
ctcatgctgcccccgcctgcgctcactgccgccggcgtcttcgccaagttccgggacatc
gcacagctggcaggcagcgcttccacaaccaagaagattgacgtcatcaaaggcctcttt
gtggcctgccgtcactcagaggcacgtttcattgccagagccctgagtggacggctgcgc
ctcgggttggctgagcagtcggtgctggcggccctcgcccaggccgtgagcctcacgccc
cccagtcaagaatgcccccccgccgtggtggacgccgggaagggcaagacggcagaagcc
agaaagacgtggctggaggagcaaggcatgatcctgaagcagactttctgtgaggtacct
gacctggagcagatcgtccccgtgcttctggaacacggcctggagcggctcccggagcac
tgcagactgagcccaggggttcccctgaaaccaatgttggcccaccctacccggggtgtc
agtgaggtcctgaagcgctttgaggaggcagctttcacctgcgagtacaaatacgacggg
cagagggcacagatccatgttctggaaggcggggaggtgaagatcttcagcaggaatcag
gaggacaatactggaaggtaccccgacattatcagccgcatccctaagattaaactccca
tcggtcacatccttcatcctagacacagaagctgtagcttgggaccgggaaaagaagcag
atccagccattccaagtcctcaccacccgcaaacgcaaggaggtggacgcggcggagatc
caggtgcaggtgtgtctgtatgcctttgatctcatctacctcaacggagagtccctggta
cgtgagcccctctcccgacgccggcagctgctccgggagaactttgtggagacggagggc
gagttcgtctttgccacctccctggacaccaaggacacggagcagatcgccgagttcttg
gagcagtcggtgaaagactcctgcgaggggctgatggtgaagaccctggacgtggacgcc
acctacgagatcgccaagaggtcacacaactggctcaagctgaagaaggactacctcgag
ggtgtgggcgacaccctggacctcgtagtgattggtgcctacctgggcaaggggaaacgg
gccggccggtacgggggcttcctgctggcctcgtacgacgaggagagcgaggagttccag
gccatctgcaagctcggaactggcttcagtgacgaggagctggaagagcaccaccagagg
ctccaggccttagtgctgcccaccccgcgctcctacgtccgggctgacggtgcggtggcc
cccgaccactggctggaccccagcgacgtgtgggaggtgaagtgcgcggacctctccctg
tcccccatctaccctgcggcccgaggcctggtggacagcgagaaggggatctccctccgc
ttccctcggtttattcgcgtccgtgaggataagaagccggagcaggccactaccagtgcc
caggtggccggtctgtacaagaagcagagtcagattcagaaccagcagggtgcggagccg
gactccgagcaggaagagttctactag
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