KEGG   Aristophania vespae: GT348_01180
Entry
GT348_01180       CDS       T06386                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bomb  Aristophania vespae
Pathway
bomb02024  Quorum sensing
bomb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bomb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GT348_01180 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    GT348_01180 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bomb03019]
    GT348_01180 (hfq)
   03036 Chromosome and associated proteins [BR:bomb03036]
    GT348_01180 (hfq)
Messenger RNA biogenesis [BR:bomb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     GT348_01180 (hfq)
Chromosome and associated proteins [BR:bomb03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    GT348_01180 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 Herpes_U55 MP GLMA_C
Other DBs
NCBI-ProteinID: QHI95091
UniProt: A0A6P1NJP9
LinkDB
Position
255557..255817
AA seq 86 aa
MSSPILDSVQDIFLQHLIAHEEPVTVFLVNGVKLQGIVVLYDAHTLLLRREGHVQLVYKN
AISTIMPIAALANFIVSIEDNTEDHL
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcgtcacctatattagattcagtacaagatatatttttacagcatctcatcgcacat
gaagagcccgttacggtctttttagtgaatggcgttaagctacagggaatcgtagtgtta
tatgacgcccatacgcttttattaagacgcgaagggcatgtgcagcttgtatataaaaat
gcaattagcactattatgcctatcgcagccttagctaattttattgtctctatagaagat
aatacagaggatcatctttga

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