Cytobacillus oceanisediminis: A361_18360
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Entry
A361_18360 CDS
T04330
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bon
Cytobacillus oceanisediminis
Pathway
bon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A361_18360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bon03019
]
A361_18360
03009 Ribosome biogenesis [BR:
bon03009
]
A361_18360
Enzymes [BR:
bon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A361_18360
Messenger RNA biogenesis [BR:
bon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A361_18360
Ribosome biogenesis [BR:
bon03009
]
Prokaryotic type
rRNA helicases
A361_18360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
NDK
DUF4422
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AND42798
UniProt:
A0A160MIW0
LinkDB
All DBs
Position
complement(3652206..3653597)
Genome browser
AA seq
463 aa
AA seq
DB search
MGFEEPTPIQAQAIPIGMKGKDMIGQAQTGTGKTTAFGVPLLEQIDLNEGIQGLVLAPTR
ELAVQVAEELNRIGQVKGVRTLPVYGGQDITRQIRALKKHPHIIAATPGRLIDHIERKTI
RLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQTLLFSATMPKRIQSLAEKFMQEP
EMVKVKAKEMTVKNIEQYYMEVHEKQKFDVLCNLLDIQSPELAIVFGRTKKRVDEVVEGL
IKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMVATDVAARGLDISGVSHVYNFDIPQD
PESYVHRIGRTGRAGNKGLAITFVSPREIDHLKIIESVTKSKMAKKPVPSFKDVVAGNQQ
ATINKLMEVIEKEEHADFKRVAESLLEDTDSVTLLAAAIKLLTKGPDVTPVKLTAVEPIR
VRKPKGDRGGRRFNDRSRGGSRDRRDFKGGRDRRTKNRSSNKG
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgaggaaccaacaccaattcaggcacaggcaattccaatcggaatgaagggg
aaggacatgattggccaggcgcagactggaactggaaaaaccactgcttttggtgtgccg
ctgttagagcagattgatttaaacgaaggtattcaaggtctagtccttgcgccaacacgg
gagcttgctgtacaggtggcagaagaattaaaccgtataggacaggtaaaaggagtccgg
acacttcctgtttacggtggtcaggatatcacccgccaaatccgtgcgcttaaaaagcac
ccgcatattattgctgctacaccgggaaggttaattgatcacattgaaagaaaaacaatc
cgtttaagcaacatcaagatggtagttctggatgaagcggatgaaatgcttaatatgggc
ttcatcgaggacattgaaagaattttaagtgaaattaaaggtgagcgccaaacccttctt
ttctcagcaacaatgccaaaaagaattcagtctcttgctgaaaaattcatgcaggaacca
gaaatggttaaagtcaaagcgaaagaaatgactgttaaaaatattgagcagtactatatg
gaagtgcatgaaaaacaaaaatttgatgtgctttgcaatctgttggatattcagtcacct
gaactggctattgtgtttggaaggactaaaaagcgtgtagatgaagtggtggaaggtctt
atcaagagaggctattctgctgaaggaattcatggtgatattccccaggcgaaaagagat
caggttatccgccgttttaaagagcagacaatcgacataatggtagccactgacgttgct
gcacgaggtctggatatttcaggtgtttcccatgtttataacttcgatatcccgcaggat
cctgaaagctacgttcaccggattggacgtactgggcgtgccggaaataaagggctggca
attacgttcgtttctccaagagaaattgaccacctaaaaataattgaaagtgttacaaaa
agcaaaatggcgaaaaagcctgttccttcctttaaggatgttgttgcaggcaatcagcag
gcgactattaataaacttatggaagttattgaaaaagaagaacatgcagacttcaagaga
gtggcggaaagccttcttgaagatacagattctgttactttgcttgctgcagccatcaaa
ttgctgactaaaggtcctgatgtaacaccggttaaattaactgcggtggaacctatccgt
gtcagaaaacctaaaggcgatcgcggcggaagaagattcaacgacaggtccagaggcggc
agccgtgatagaagagattttaaaggcggccgggacagacgcactaaaaaccgcagcagc
aataagggataa
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