Cytobacillus oceanisediminis: A361_19660
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Entry
A361_19660 CDS
T04330
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bon
Cytobacillus oceanisediminis
Pathway
bon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A361_19660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bon03019
]
A361_19660
03400 DNA repair and recombination proteins [BR:
bon03400
]
A361_19660
Enzymes [BR:
bon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A361_19660
Messenger RNA biogenesis [BR:
bon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A361_19660
DNA repair and recombination proteins [BR:
bon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A361_19660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Filament
Helicase_C_2
TSNAXIP1_N
Motif
Other DBs
NCBI-ProteinID:
AND41277
UniProt:
A0A160MDV5
LinkDB
All DBs
Position
complement(3905928..3907427)
Genome browser
AA seq
499 aa
AA seq
DB search
MRLEALLQSKFGFSAFRPGQKEIIESVLSGRNTVAMLPTGTGKSLCYQLPGYMIEGQVII
ISPLLSLMQDQAEHLMMNGEKKVIAFNSFLTRGEKKQALIHLNQYKFIFISPEMLYYESV
LSQLKKLRIALFVVDEAHCISQWGYDFRPDYLKLGEVRKIIGNPVTLALTATATAEVKAD
IKKSLGILDCSEFIYSVDRPNIALSVERLENFREKTERLVELAEILQGPGIIYFSSKKMA
EQSAELLRDKGAKRVMAYHGGMDQESRILVQQQFIHGQLDLICATSAFGMGINKDNIRYV
IHFHMPLQIESYLQEIGRAGRDGNQSIAIMLYAPGDEQLPIQLAESELPDKAQIDWIKEW
IEENPNAIQNIGPFEEQIKQRSGLTDVQWRIFNDFFEKKSKSGLDYRRILQEMKEYYEGR
IKLKRDSIEEVYKWIYKKTCRRESILSCFDEEKNASVPSCCDICGLQLENFLRNTNSDNQ
ESPLYDWKNHLEYLLIPSE
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgagattagaagcgctattacagagcaaatttggattttctgcctttagacctggacaa
aaggagatcattgaatctgtgctttcagggagaaatactgttgccatgctgcctacaggt
acaggtaaatccctatgttatcagctgccgggatatatgattgaaggtcaggtgattatt
atatctcctttgctgtcccttatgcaggatcaggctgaacaccttatgatgaatggggaa
aaaaaggtgattgcattcaattcctttttaacccgcggagaaaaaaaacaggcattgatt
catctgaatcaatataagtttatctttatttcacccgaaatgctttattatgagtcagta
ctatcacagttgaagaaattgcgcattgctttatttgttgtggatgaagctcattgtatt
tcccaatgggggtatgatttcagacccgattatttaaagctgggggaagtcaggaaaatt
atagggaacccggttactctggcattaacagctacagctaccgctgaagttaaagcagat
ataaaaaagtcacttggcatactggactgcagcgaatttatatactccgttgaccgtcct
aatattgcattatctgtagaaaggttagagaatttccgtgaaaaaacagagagacttgtg
gagcttgctgaaatccttcagggccctggaattatttatttttccagcaaaaaaatggcg
gaacagtcagctgagctgcttagggacaaaggagccaaaagagtgatggcttaccatggg
ggaatggaccaggaaagccgtatccttgtgcagcagcagtttattcatgggcagctcgat
cttatttgtgctacaagcgcctttggcatggggattaataaagataatatcaggtatgta
atacactttcatatgcctcttcagattgaatcctatttgcaggaaattggccgggcaggg
agagatggaaatcaaagtatagccattatgctctatgcaccgggtgatgagcagcttccc
atacagcttgcagaaagtgaattgcctgacaaagcacaaattgattggattaaggaatgg
atagaagaaaacccaaatgcgatccagaatattggtccttttgaagagcaaattaagcag
cgttccggtttgaccgatgttcagtggcgaatttttaatgatttttttgaaaagaaaagc
aaatctggactcgattacagaaggattctgcaggagatgaaggagtattatgaaggcaga
atcaaactgaaaagggatagcattgaggaagtatataagtggatctacaagaagacatgc
cggagagagagtatactttcctgctttgatgaggaaaaaaatgcctcagtcccatcctgc
tgcgatatttgcggtttgcaattggaaaatttcttaaggaatacaaattcagataatcag
gaaagcccgctgtatgattggaaaaatcatctggaatacctcctgattccaagtgagtga
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