Rhodophyticola sp. CCM32: E2K80_08945
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Entry
E2K80_08945 CDS
T05925
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
boo
Rhodophyticola sp. CCM32
Pathway
boo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
boo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E2K80_08945 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
boo03021
]
E2K80_08945 (rpoD)
Transcription machinery [BR:
boo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E2K80_08945 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
FTCD_C
Motif
Other DBs
NCBI-ProteinID:
QBY00836
LinkDB
All DBs
Position
1823517..1825514
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AA seq
665 aa
AA seq
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MAKDTDDRKQDGDEAEISLDMSQTAVKKMIAEARTRGYITYDQLNTVLPPEQVSSEQIED
VMSMLSEMGINIIEDDEAEDSDDSKQGTDVVEASTSREVAVSATETEKLDRTDDPVRMYL
REMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLDEDILLRDVI
DLDATFGRTMEGEESVEPVVPAPVSNDNAAPAKPKEEAQQELDADGNPITRDDDEDDEDE
QANMSLAAMEAALKPRVLETLDLIARDYVKLSEMQDLRISATLNEDSSFSSKEEKAYQKL
RSEIVELVNELHLHNNRIEALIDQLYGINRRIMSIDSGMVKLADQARINRREFIEAYRGY
ELDPTWVDRMADNAGRGWQALMERSRPKVEELRADMAQVGTYVGLDINEFRRIVNQVQKG
EKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQ
MPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVL
ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLR
SFLDQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagatacggatgatcgcaagcaagacggcgacgaggcggaaatcagcctcgat
atgagccaaaccgccgtcaaaaagatgatcgccgaggcgcgcacgcggggctacatcacc
tatgatcagctgaacacggttctgccgccggaacaggtcagttccgaacagatcgaagat
gtgatgtcgatgctgtcggaaatgggcatcaacatcattgaggatgacgaggccgaagac
agcgacgacagcaaacaaggcaccgatgtggttgaggcctcgacctcccgcgaggtggcg
gtttccgcaaccgagaccgaaaagcttgaccgcaccgatgacccggtgcgcatgtatctg
cgcgaaatgggctcggtcgagctgttgtcgcgtgaaggcgaaatcgcgattgccaagcgg
atcgaggccggccgcaacacgatgatcgcgggcctctgcgaaagcccgctgaccttccag
gcgatcacgatctggcgcgacgaattgctggacgaggatatcctcctgcgcgatgtgatc
gaccttgacgcaacattcgggcgcacgatggaaggcgaggaaagcgttgaaccggtcgtg
cctgcgccagtgtcgaacgacaatgccgcgcccgccaaacccaaagaggaagcgcagcag
gaactggatgccgatggcaacccgatcacccgggatgacgatgaggatgatgaggacgaa
caggccaatatgagcctggcggcgatggaggccgcgctgaaaccgcgcgtgcttgaaacc
ctggacctgatcgcgcgcgattatgtgaaactgtctgagatgcaggatctgcggatctcg
gccacactgaacgaagacagcagtttctcttccaaggaagaaaaagcctatcagaaactc
cgctcggaaatcgttgagctggtgaatgagcttcacctgcataacaaccggatcgaggcg
ctgattgaccagctttacgggatcaaccggcggatcatgtcgattgacagcggaatggtg
aaactggccgatcaggcccggatcaaccgccgggagtttatcgaggcctatcgcggctat
gaacttgacccgacctgggttgaccggatggccgacaatgccggtcgcggctggcaggcg
ctgatggaacggtcgcgcccgaaggtggaggaactgcgcgccgacatggcccaggtcggc
acctatgtggggctggatatcaacgaattccgccggatcgtgaaccaggtccagaagggc
gagaaagaggcgcgtcaggccaagaaggaaatggtcgaggccaatctgcgtctggtgatc
tcgattgccaagaaatacaccaaccggggcctgcaattccttgatctcattcaggaaggc
aatatcggcctgatgaaggcggtggataaatttgaataccgccgcggctataaattctcc
acctatgccacctggtggatccgtcaggcgatcacccgctcgattgccgatcaggcccgc
acgatccgtattccggtgcatatgatcgaaacgatcaacaaactggtgcgcaccggccgc
cagatgctgcatgagatcggccgcgagccgaccccggaagagctggccgaaaagctgcaa
atgccgctggaaaaagtgcgcaaggtgatgaaaatcgccaaggagccgatttcgctggaa
accccgatcggcgatgaggaagacagccagcttggcgatttcatcgaagacaagaacgcg
gttctgccgctggacagcgcaattcaggagaacctgaaagagaccacaacccgggttctg
gccagcctgaccccgcgcgaggaacgggtgctgcgcatgcgcttcggcatcggcatgaat
accgatcacaccctggaagaggtcggccagcagttcagcgtgacccgggaacggatcaga
cagatcgaggcgaaggcgctcaggaaactgaaacatccaagccggtcacggaaactgcgg
agtttcctggatcagtag
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