Rhodophyticola sp. CCM32: E2K80_12545
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Entry
E2K80_12545 CDS
T05925
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
boo
Rhodophyticola sp. CCM32
Pathway
boo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2K80_12545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boo03019
]
E2K80_12545
03009 Ribosome biogenesis [BR:
boo03009
]
E2K80_12545
Enzymes [BR:
boo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E2K80_12545
Messenger RNA biogenesis [BR:
boo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E2K80_12545
Ribosome biogenesis [BR:
boo03009
]
Prokaryotic type
rRNA processing factors
E2K80_12545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QBY01448
UniProt:
A0A4P7JHV1
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Position
complement(2587334..2589979)
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AA seq
881 aa
AA seq
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MAKKMLIDATHAEETRVVVADGTRVEEFDFESLNKRQLAGNIYLAKITRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPTADREALLAEEREYAEAMAATEDEPRPKRRSRRRRKGS
ETKAEATSNDAVTTGEARPPSGMDVVDLGQEEDAAASADATETGPETAPESAADAAETPV
ELTAETPAEAETEAAEAEAETPKPRSRSRRSAKAKAAEKATEAETEETTDAEKSGDDADA
AEEDDVDTVADDDDQEDIRPVRKPRPRKYKIQEVVKVRQIMLVQVVKEERGNKGAALTTY
LSIAGRYCVLMPNTARGGGISRKITVAADRKKLKEIATGLDVPQGAGLIVRTAGAKRTKA
EIKRDYEYLQRQWEQVRALTLKSTAPAPIYEEGNLIHRSIRDLYNRDIDEVLVEGDVGYR
QAKDFMKMIMPSHAKNVKHYTDPMPLFARHKVEGYLADMFNPVVQLKSGGYIVIGVTEAL
VAIDVNSGRATKEGSIEETATKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDDRRNNNAV
EKRIKDKLKTDRARIQVGRISAFGLMEMSRQRLRPGMLEATTQPCPACHGTGLVRSDDSL
ALSILRQLEEEGTRRRSREVLLTAPVGIVNFIMNVKREYLAEIEARYGLSVRIEADSHLV
VPDYKIEKFKTATRRVPDAAPIVSMDAALMEQVEEAASAGDDGDNTPEATGPADGEENGT
KRKRRRRRGGRGRRRSNGEDAAQNGDAEEGDAPTEADETVAAEAETSAEAEATADAPEAP
AEDEAKPKRRRSRGGRGRKKATDAPSEEGAEPSPETGTDAAPAVKDTTSEPEPAPEPEPV
AETVAAVAAPDPAPEPSPESVAVEVDDGPPKPKRKGWWSLG
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaagatgcttatcgatgccacacacgcggaagagacccgcgttgtcgtggca
gatggaaccagggttgaggagttcgactttgagtcgctgaacaagcggcaactggcagga
aatatctatctcgcaaagatcacccgggtggagccatcgcttcaggccgcctttgtggat
tatggcggcaatcgccacggctttctggccttctcggagattcacccggattattaccag
atcccgaccgcagaccgcgaggcgttgctggccgaggaacgggaatatgccgaggcgatg
gccgcgaccgaggatgagccgcgcccgaaacggcgcagccggcgccgtcgcaagggcagt
gagaccaaggcagaggccacatcgaacgatgcggtgacaaccggcgaggccagacccccg
tctggcatggatgtcgtcgatctgggtcaggaggaggacgcggctgcctccgctgatgca
accgaaaccggtcccgaaactgcccctgagagcgcagcagacgctgccgaaacgccggta
gaactcacagcggaaacgcccgcagaggccgagactgaagctgctgaggctgaagccgaa
acacccaaaccccggtcgcggtctagacggtccgccaaggcaaaagccgccgagaaagcc
accgaggctgagacggaagaaacaacagatgccgagaagagcggcgatgatgcggatgct
gcggaagaggatgatgtcgacacggtcgccgatgatgatgaccaggaagacatccggccg
gtccgcaaaccccggccccggaaatacaagattcaggaggtcgtgaaggtccgccagatc
atgctggtgcaggtcgtcaaggaagagcgtggcaacaagggcgcggcgctgaccacctat
ctgtcgatcgcgggccgctattgtgtgctgatgccgaatactgcacgcggcggtggcatc
tcgcgcaagatcacggtcgccgccgaccgcaagaagctgaaggaaatcgccactgggctg
gatgtgccccagggcgcgggcctgattgtgcgcacggcaggggccaaacgcaccaaggcc
gaaatcaaacgcgactatgaatatctgcaacggcaatgggaacaggtgcgcgcgctgacc
ctgaaatccaccgcgcctgcgccgatctatgaagagggcaacctgatccaccggtcgatc
cgcgatctttataatcgcgatattgacgaggtgctggtcgaaggcgatgtcgggtatcgg
caggccaaggacttcatgaagatgatcatgccgtcccatgccaagaacgtgaaacattac
accgacccgatgccgcttttcgcgcgtcacaaggtcgagggttacctggccgatatgttc
aacccggtcgtgcagctgaaatccggcggctatatcgtgatcggcgtgaccgaggcgctg
gtggcgattgatgtgaactctggccgggccaccaaggaaggctcgatcgaggagaccgcg
accaagaccaatctggaggccgcagaagaggtggcgcgccagttgcgcctgcgcgatctg
gccggtctgatcgtgatcgacttcatcgacatggatgaccggcgcaacaacaacgccgtt
gaaaagcggatcaaggacaagctgaaaaccgaccgggcgcggattcaggtgggccggatt
tcggctttcggcctgatggagatgagccgccagcgcctgcgtccgggtatgcttgaggcg
acgacccagccatgccccgcctgccatggcaccgggctggtccggtccgatgacagtctg
gcgctgtcgatcctgcgccagctggaggaggaaggcacgcggcgccggtcgcgcgaggtg
ttgctgaccgcgccggtggggatcgtgaacttcatcatgaatgtgaaacgcgaatacctt
gccgagatcgaggcgcgctatggcctgtcggtgcggatcgaggcagattcgcatctggtg
gttcccgattacaagatcgagaaattcaagacagccacaaggcgggtgcccgatgcggcg
ccgattgtctcgatggatgccgctttgatggaacaggtcgaagaggccgcctcggcaggg
gatgacggggataatacgccagaggccacagggcctgcggatggggaagagaacggcacc
aagcgcaagcgtcgtcggcgcaggggcggtcggggccgccgccggtcaaacggtgaggat
gccgcacagaacggggatgcggaagagggcgatgcgccaacagaagcggacgagaccgta
gcggcagaggcagagacatccgccgaggccgaggccaccgcagatgcccctgaggcgccc
gctgaagacgaggccaaaccgaaacgccgccgctcacgcggggggcgtggccggaaaaag
gccacggatgcgccttcggaagagggtgcagagccgtcgcccgagacagggacagatgca
gcacccgccgtcaaggacaccacctctgagccggagcctgcccctgagcccgagcctgtg
gctgaaactgtcgcagcagtggcagcacctgacccggcccctgaaccaagcccggaatcg
gtggccgttgaggtcgatgacggcccgccgaaacccaaacgcaaaggctggtggtcgctc
ggctga
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