Rhodophyticola sp. CCM32: E2K80_12695
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Entry
E2K80_12695 CDS
T05925
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
boo
Rhodophyticola sp. CCM32
Brite
KEGG Orthology (KO) [BR:
boo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
boo03016
]
E2K80_12695 (rnd)
Enzymes [BR:
boo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
E2K80_12695 (rnd)
Transfer RNA biogenesis [BR:
boo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E2K80_12695 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
CCDC73
Motif
Other DBs
NCBI-ProteinID:
QBY02778
UniProt:
A0A4P7JL85
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All DBs
Position
complement(2615895..2617058)
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AA seq
387 aa
AA seq
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MTQTLTSTDALAAFCARAATAAYVTVDTEFLRERTYFAQLCLVQLALPGTDETEDAVLID
PLAQGLSLEPLFDLFRNESVVKVFHAARQDLEIFHVDGNVVPKPLFDTQVAAMVCGYGDQ
VGYETLVRKITSGGVDKSSRFTDWSRRPLSDAQKSYALADVTHLRQIYEHLAAQLEETGR
TAWMEEELRVLTNADNYVVEPDNAWRRLKLRSNSGRFLAVVKELAAFRETHAQTRNIPRN
RVIKDDALMEIASSKPKSIEDLSKSRLLLREARRGEIAEGLIAAVGRGLSADPGTFPALP
KGRDRSALNPALADLLRVLLKAKAEEAGVAQKLIASASDLDDIAAGHHDGLWCKGWRRDV
FGEDALRLTRGEIALSAKGQKVQIIAV
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
ttgacccagaccctgaccagtaccgacgcgcttgccgccttttgcgcccgcgccgccacc
gccgcttatgtcaccgtcgataccgaatttctgcgtgaacggacctatttcgcgcagctt
tgtctggtgcaactggccttgcccggtacggatgagacagaggatgcggtgctgatcgac
ccattggcccagggcctgtcgctggaaccgttgtttgatctgtttcgcaatgagtcggtg
gtcaaggtcttccatgccgcgcgtcaggatctggaaatttttcatgtggatggcaatgtt
gtgccaaagccgctgtttgatacccaggtggccgccatggtctgcggttatggcgatcag
gtggggtatgaaaccctggtgcgcaagatcaccagcggtggggtcgataaatcctcgcgc
tttaccgactggtcgcgccgcccgctaagcgatgcgcagaaatcctatgcgctggccgat
gtcacccatctgcggcagatttacgaacatctggccgcacaactggaagagaccggccgc
accgcctggatggaagaggaattgcgggttctgaccaatgcggacaattacgtggtggag
cccgataacgcctggcgccgcctgaaactgcgcagcaattccgggcggtttctggccgtg
gtgaaagaactggccgcgtttcgggaaacccatgcccagacccgcaatatcccccgcaac
cgggtgatcaaggatgacgcgctgatggagattgcgtcgtcaaagccgaaatccatcgag
gatctgagcaaatcgcgcctgcttctgcgcgaagcgcggcggggtgagattgccgagggg
ctgatcgcggcggtcgggcgcggcctgtcagcagatcccggcacgtttcctgccctgccc
aaaggccgtgatcgctcggccctgaacccggcgctggcggatctgctgcgcgtgcttctg
aaagccaaggcggaagaggcgggcgtggcccagaaactgatcgcctcggcctcggatctt
gatgatatcgcggcgggccatcatgacgggctgtggtgcaagggctggcggcgggatgtg
tttggagaagatgccctgcgcctgacccggggcgagatcgcgctgtcggccaagggtcag
aaagtgcagatcatcgccgtctga
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