Rhodophyticola sp. CCM32: E2K80_14380
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Entry
E2K80_14380 CDS
T05925
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
boo
Rhodophyticola sp. CCM32
Pathway
boo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2K80_14380 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boo03019
]
E2K80_14380 (rnr)
03016 Transfer RNA biogenesis [BR:
boo03016
]
E2K80_14380 (rnr)
Enzymes [BR:
boo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E2K80_14380 (rnr)
Messenger RNA biogenesis [BR:
boo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E2K80_14380 (rnr)
Transfer RNA biogenesis [BR:
boo03016
]
Prokaryotic type
tRNA degradation factors
E2K80_14380 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QBY01763
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Position
2959452..2961713
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AA seq
753 aa
AA seq
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MSRLPTKSDILAWIAEHPSQTSKRDIAKAFHIKGAARIDLKRLLRELEQEGHLEKRRKTY
RDPDKLPPVSVLQMLPPDDLGDLFARPLEWHGEGPEPRILFSARATDPALGAGDRILARL
QETRGEDHQYIARLIRRIGTNPRKLLGIFRSSAEGGRIVPIAKGSDREWVVAADATHGAK
DGELVEAEQAGPKTRMGLPRARVTDRLGDPGAPKAVSLIAIHEHGIPDAFPDPVIAEADA
AKPADLSSGREDLRDMPLVTIDPGDARDHDDACYAHADDDPKNKGGFVIWVAIADVAQYV
RPGSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAARMVIDAEGNKL
GHSFHRGLMRSAASLTYEEVQQAQDGAPNDRCQPLLEPVIAPLYAAYGALKRARATRQPL
ELDLPERRIMLSDAGQVTSVAFKDRLDAHKLIEEFMVLANVAAAETLIAKRTPLLFRVHE
EPDPQRLESLRETAQSSGFNLAKGQVLQTRHLNALLSVADDTEFSELINISTLRSMQQAY
YNAENFGHFGLALKSYAHFTSPIRRYADLIVHRALVSAHGWGRDGLSSEEIDRFDDTAKH
ISDTERRSMVAERDTNDRYLAAYLSDRVGAEFTGRISGIARFGAFVKLAETGADGLLPMR
ALGREYFHHDAEAQTLMGADTGLIIGIGQEVTVKLAEAVPVTGGLTLDLVSIDGETVRHG
PANARRGKPPRRKAGQSRAKAAKGKKKTLRKRR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcctccccacaaaatcagacatcctcgcctggattgccgagcatcccagccag
acctccaaacgcgatatcgccaaggcctttcacatcaagggcgcggcacggatcgacctg
aaacgtctcctgcgtgagctggagcaggaggggcatctggaaaagcgccgcaaaacctat
cgcgacccggataaactgccgccggtctcggtgctgcaaatgctgccccccgatgatctg
ggcgatctgttcgccagaccgctggaatggcatggggaggggccggaaccgcgcatcctg
ttctcggcccgcgcaaccgatccggcgctgggggcgggggaccgtattctcgcccgtctg
caagagacccgtggtgaagaccaccagtatatcgcccgtctgatccgccggatcggcacc
aacccccgaaagcttctgggcattttccgcagctctgccgagggcgggcgcatcgtgccg
atcgccaagggcagcgacagggaatgggtggtcgccgcggatgccacccatggcgccaaa
gacggggagttggtggaggcggaacaggcgggtccgaaaacccgcatgggcctgccgcgc
gcgcgtgtcaccgaccggctgggcgaccccggtgcgccgaaagccgtcagcctgatcgcg
atccatgaacatggcatcccagacgctttccccgatccggtgatcgcagaggcagacgcc
gccaaacccgcagacctgtcgtcgggtcgtgaggatctgcgcgacatgccgctggtcacc
atcgacccaggcgatgcccgcgaccatgatgatgcctgctatgcccatgcggatgacgac
ccgaaaaacaagggcggttttgtcatctgggtcgccattgccgatgtggcccaatatgtt
cgccccggctctgccctcgaccgggaggcccggaaacgcggcaattccacctatttcccc
gaccgggttgtgccgatgctgcccgaccggctgtcaggtgatctctgctcgcttcatgaa
ggggtgccgcgcgcctgtatcgccgcccgcatggtgatcgacgccgagggcaacaagctt
ggccacagctttcatcgcgggctgatgcgctctgccgcctcgctgacttatgaagaggtg
caacaggcacaggatggcgcgcccaatgacagatgtcagccgctgctggagccggtcatc
gcgccgctttatgccgcttacggtgccctgaaacgcgcccgggccacccggcaaccgctg
gaactggacctgcccgaacgccggatcatgctcagcgatgcgggtcaggtgacgtccgtt
gcgttcaaagaccggctggacgcccataagctgatcgaggaattcatggtgctggccaat
gtcgccgcagccgaaaccctgatcgccaaacgcacgccgcttctgtttcgcgtccatgaa
gagccggacccgcagaggctggaaagcctgcgcgaaaccgcccaaagctcgggcttcaac
cttgccaaggggcaggttctgcaaacccgccatctgaatgcgttgctaagcgtcgccgat
gacacagagttcagcgagctgatcaacatctctaccctgcgctccatgcagcaggcctat
tacaatgcagagaatttcggccatttcggcctggcgttgaaatcctatgctcatttcacc
tcgccgatccggcgctatgcggatctgatcgtgcatcgggcgctggtcagcgcccatggc
tggggccgtgacgggttgagctcggaagagattgaccggtttgacgacacggccaaacat
atctcggataccgagcgccggtcgatggtggcggaacgcgacaccaatgaccgctatctt
gcggcctatctgtcagatcgcgtgggggcagagtttaccgggcgcatctctggcattgcc
cgtttcggggcgtttgtgaaactggcggaaaccggggctgacgggctgttgcccatgcgc
gccctggggcgggaatatttccaccatgatgccgaggcgcaaaccctgatgggggccgat
accgggctgatcatcggcatcggtcaggaggtaaccgtgaaactggccgaggctgtgccc
gtcaccggcgggctgacgctggacctggtttccatagatggagagaccgtgcgccacggc
cctgccaatgcgcgacgcggcaaacccccacggcgcaaagccggccagtcccgcgccaaa
gcggcaaaaggcaaaaagaaaaccctgcgcaaacgccgctga
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