Bosea sp. PAMC 26642: AXW83_01035
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Entry
AXW83_01035 CDS
T04264
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bop
Bosea sp. PAMC 26642
Pathway
bop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXW83_01035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bop03019
]
AXW83_01035
Enzymes [BR:
bop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXW83_01035
Messenger RNA biogenesis [BR:
bop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXW83_01035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NACHT
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMJ59067
UniProt:
A0A126NQD1
LinkDB
All DBs
Position
225285..226733
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AA seq
482 aa
AA seq
DB search
MTQFTDLGLAEQLLKALASEGYTTPTPIQAQAIPPILQGRDLLGAAQTGTGKTAAFALPL
IQRLLTQPRRMETRSVRALILSPTRELAAQIETSIRAYAQFTTIKSTVVFGGVPVGKQIR
ALGQHVDILVATPGRLLDLVDQRAVSLREIEYLVLDEADQMLDLGFVHALRRIATLIPKK
RQTLLFSATMPKPIREIASAYLTDPVEVSVAPVATTAEKIDQRVIFTQPGEKPALLAKTL
SGPDMERAIVFTRTKHGADKVVRQLEVSGIKSAAIHGNKSQGQRERALGAFRDGELRILV
ATDIAARGIDVDGISHVVQFDLPNVAETYVHRIGRTARAGASGMAIAFCTPEERGDLAAI
EKLTRIAITPMGEVPYWDGRTPKKPPQNQGRGGRGGGQGAGGGRDHGRPGGGQRQGAKPQ
HAGGGRSEAPRSEAPRNDRPARTEQPAQRKDGGSAKEGLGGVAFLQQRTDQRRTGGARRR
AN
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
ttgactcaatttaccgacctcggcctggccgagcagcttctcaaggcgctcgcctccgaa
ggttacaccacgcccacgccgatccaggcccaggcgattcccccgatcctccagggccgc
gaccttctcggcgccgcccagaccggcaccggcaagacggccgccttcgcgctgccgctg
atccagcgcctgctgacgcagccgcgccgcatggaaacgcgctcggttcgtgcgctgatc
ctgtcgccgacccgtgagctcgccgcgcagatcgagacctcgatccgcgcctatgcccag
ttcaccacgatcaagtcgaccgtcgtcttcggcggcgtccccgtcggcaagcagatccgc
gcgctcggccagcatgtcgatatcctcgtcgccacgcccggccgcctgctcgatctcgtc
gatcagcgcgccgtctcgctgcgcgagatcgaatacctcgtcctggacgaggctgaccag
atgctcgatctcggcttcgttcatgcgctgcgccggatcgccacgctgatccccaagaag
cgccagacgctgctgttctcggcgacgatgcccaagccgatccgcgagatcgcctcggcc
tatctgaccgatcccgtcgaggtctcggtcgcgcccgtcgcgaccaccgcagagaagatc
gaccagcgcgtcatcttcacccagcccggtgagaagccggctctgctggcgaagaccctg
agcggtcctgacatggagcgcgccatcgtcttcacccgcaccaagcacggcgccgacaag
gtcgtccgccagctcgaggtgtccggcatcaagtccgcggcgatccacggcaacaagagc
cagggccagcgcgagcgggcgctcggcgccttccgtgacggcgaattgcgcattctggtc
gcgaccgacatcgccgcgcgcggcatcgatgtcgacggtatcagccacgtcgtgcagttc
gacttgcccaacgtcgccgagacctatgtccaccgcatcggccgcaccgcgcgcgccggc
gcctcgggcatggcgatcgccttctgcacacccgaagaacgcggcgatctcgccgcgatc
gagaagctgacccgcatcgccatcacgccgatgggcgaggtgccgtattgggatggccgc
acaccgaagaagccgccccagaaccagggtcgcggcggacgcggcggtggtcagggcgcc
ggtggcgggcgcgatcacggccggcccggcggcggccagcgtcagggcgccaagccccag
catgccggcggcggccgcagcgaggcaccccgcagtgaggcgccgcgcaacgaccgtccg
gcgcgcaccgagcagcccgcccagcgaaaagacgggggttccgccaaggaagggcttggc
ggcgtcgccttcttgcagcaaagaacagatcaacgacgcaccggcggcgcccggcgtcgc
gcgaactga
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