Bipolaris oryzae: COCMIDRAFT_100294
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Entry
COCMIDRAFT_100294 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K11292
transcription elongation factor SPT6
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bor03021
]
COCMIDRAFT_100294
03036 Chromosome and associated proteins [BR:
bor03036
]
COCMIDRAFT_100294
Transcription machinery [BR:
bor03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
COCMIDRAFT_100294
Chromosome and associated proteins [BR:
bor03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
COCMIDRAFT_100294
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HTH_44
HHH_7
Spt6_S1
Tex_central_region
SPT6_acidic
HHH_9
SH2
Tex_YqgF
Spt5_N
NBD94
Motif
Other DBs
NCBI-GeneID:
19117644
NCBI-ProteinID:
XP_007689845
JGI:
Cocmi1_100294
UniProt:
W6Z1N6
LinkDB
All DBs
Position
Unknown
AA seq
1372 aa
AA seq
DB search
MSEFFDTIADVGSDEEEDEDFDGETGEGFIADDDDEEEEEEVAERRRRRKKKRKNREAEE
ALDDEDLDLIGVEVERPAEEQRLKRGHKERVKSRGVDDIFSDDEVNEDYDEPRARLGDEF
DDFIEDDKFEDEIEDDRDVTQPGINLITKGLQAAGLDEGAEEDYRAAFGDGTDYDWALEM
QEAEEDEQAGDGRELQLKDVFEPSQLQERMLTDEDNTIRETDIPERLQLARKPFKEIELT
PEDMQARLTEEATWISNMLWPKKGLPRYFLQPFEKAVRKVLEFINLEDYEVPFIFNHRKD
YLIHAPSDNDFDDIDNPPPMDARPERLLNQADLWEVFDFDLKFRAFAEKRDALRQNYENL
KSIYPEINDTEIEELSSRAITIEEIQELQDYLHYRYSQEINEVRQEVNGTQKRANNARSF
FDKLRGSKANQLVKAIGITPEDFAKKVDGTSRGAYTIEDPPYKVEELADQLAEAPETGAT
LLRSTKLLFVQDLQMCSRLRRYLRGSFYQNAEIDCIRTDKGMRKITEDHPYYEFKYLRRV
TFSDLQGRPDLFLKMLKAESEGLVQVKISMGNYAQFKARLQEKIVSDGVSEVSDTWNALR
KELLNVALDKLQTVIANGVKETLRARCEDELAASARENYYNKLDQAPYKLKSAPLGSIPN
VLCLSNGKGQRGDAIMWAYVENDGRVLEQGRLVEMRLGNAERGIPEGQDIEKLVDVIQRR
RPDVIGVSGFSVETRKLYKDIQEIISQRGLTGPAYEDEDTGDERNEPLEVIMVNDEVARL
YHTSARAAAEFPKYPALTRYCIALGRYLQNPLAEYASLGRDIVSIPFIPNQTLIPQEKLL
DRLDTAMVDMVNLVGIDLPETYDDKYLSKLIPYVCGLGPRKADRLIKAIQANSDEILSRF
DLLGVSESRDLKAAMGPKVFQNCASFLYIPYDPTEESSDYLDYTRVHPEDYDLARKMVAD
ALNMDEEDVKAETDEGGPSAVVRKMVREETTDLVNDLALEDYAAEIERNFGQRKRATLET
IRAELDNPYEEIRQIFALLSGDEMFTMLTGETKESLYEGMVVPVTIKRAFPDHIEVKLEC
GIEGGVSESEFPEGVGSGGQEPRHVYSSHQIVRARIVYLNRKALTAQLSLRDDLIRQPQK
KPYDRAAGEWDEAQEMQDKKAAEKEKEVASGRPNRVVNHPLFFSFNTVQAEEYLGGKETG
DLVIRPSSKGFDHLVVTWKVSNNAYQHLDVLEMNKANQFSLGKQLKIGKHTYSDLDELIV
NHVEAMARKVTELTRDERFQPGTREDTEKWLENYCEANPSRSMYAFCSMPKYPGHFWICF
QMSAKGPKGAWGIKVVPNAFELQKHVYPDMVALKNGFKMLVSAAASKAPVRR
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattcttcgacacaatcgccgacgtcggtagcgacgaggaggaggatgaggac
tttgatggcgagactggcgaaggcttcatcgccgatgacgacgacgaagaggaggaggag
gaagtggcagagcgccggcgccggcgcaagaagaagagaaagaaccgcgaggccgaagag
gctctcgacgacgaagatcttgacctgatcggcgtcgaggtagaacgcccggccgaagaa
cagcgcctcaagcgtggtcacaaggagcgcgtcaagtcccggggtgtcgacgacatcttt
tccgacgacgaggtcaacgaagactacgatgagccgcgggcccggttgggcgacgaattt
gacgacttcatcgaggacgacaagtttgaagacgaaatcgaagatgaccgcgacgtcacg
cagccaggcataaatctaattaccaaggggctgcaagctgctggactcgatgagggtgcc
gaggaagactacagagctgcattcggtgatggcacagattacgactgggcgttggaaatg
caagaagccgaagaggacgagcaagctggcgatggtcgcgaactgcaactcaaggacgtt
ttcgaaccatcacaactgcaggagcgcatgttgacagatgaagacaatactatccgcgaa
accgacattcccgagcgcctgcaattagcccgaaagcccttcaaggagattgaactcaca
ccggaggacatgcaggcacgtctgaccgaggaggcaacctggatcagtaatatgctgtgg
cccaagaagggtcttccaagatactttttgcagcctttcgagaaggctgtacgaaaggtt
ctcgagtttatcaacctggaggattatgaagttccctttatcttcaaccaccgaaaagac
tacctcattcatgcgccgagcgacaacgattttgatgacatagacaatccgccacccatg
gatgctcggccagagcgtctgctcaaccaggccgacttgtgggaggtcttcgatttcgac
cttaagttcagggcttttgctgagaagcgtgatgctctcaggcagaattacgaaaacctg
aagagcatctaccctgaaattaacgacactgagattgaggagttgtcttccagggccatt
accattgaagaaatccaagagctccaggactatctgcattatcgatactcacaggagatc
aacgaggttcgacaagaagtcaatggaacacagaagcgtgccaacaacgcccgaagcttc
ttcgacaagctgcgaggcagcaaggccaatcaacttgtcaaggcaattggcatcacaccc
gaagactttgcgaagaaggttgatggaacgagcagaggcgcgtataccattgaagatcct
ccgtacaaggtcgaagagctcgccgatcagcttgccgaagctccagaaacgggcgctact
cttttgaggtccacaaagctactgtttgtccaagacttacaaatgtgctcgcggctgcgg
cgatacttgcgtggtagcttctaccagaatgccgaaattgactgcattcgcaccgacaag
ggcatgcggaagattactgaggaccatccctactacgagttcaaatatctgcgcagagtc
accttttcggatctccaaggtcgcccagatctgtttttgaagatgctcaaggctgaatcc
gaaggccttgtgcaagtcaagatttccatgggcaactacgcacaattcaaggctcgtttg
caagagaagatcgtctctgacggtgtcagcgaggtttccgatacgtggaatgccctccgc
aaggagctactcaacgtcgcacttgacaagcttcagaccgtcattgcaaacggtgtcaag
gaaactctgcgtgccaggtgtgaggatgagcttgcggcttcagcgagagagaactactat
aacaagcttgatcaggcaccctacaagttgaagagtgcccctcttggctcaatccccaac
gtcctctgcttgtccaacggcaagggtcagcgtggagacgccatcatgtgggcttacgtg
gagaacgacggtcgtgtcctagagcagggtcgactagtcgagatgcgtcttggcaatgct
gaacgcggtatccctgaaggacaagacatcgaaaagctggtcgatgtcatccagcgccga
cgcccagatgtcattggtgtcagtggcttttcggttgaaacacgcaagctgtacaaggat
attcaggaaatcatcagtcaacgaggcttgactggccctgcctatgaggatgaggatact
ggtgacgaaagaaacgagcctctggaggtcatcatggtcaacgacgaagttgcccgtttg
taccacaccagtgccagggcggctgcggagttccccaagtaccctgcgctcacaaggtac
tgcattgccttgggaagatatctgcaaaacccactcgccgagtacgcatcgctcggtcgc
gacattgtttctattcctttcattccgaaccagactttgataccccaggagaagcttttg
gaccgactagacactgccatggtcgacatggtcaacctcgttggtatcgacttgccagag
acctatgacgacaagtatttgtcaaaactaataccatatgtgtgcggtttgggacctcgt
aaggccgacaggctgatcaaggccatccaagcgaatagcgacgagattctttcaagattt
gatcttcttggtgtatccgagtcgcgcgacctcaaggcggctatgggccccaaggtcttc
caaaactgcgccagtttcttgtatattccttacgacccgactgaagagtcatctgattac
ctagactacacgcgtgtacatcccgaagactacgatctggcacgcaaaatggtcgctgat
gcactgaacatggacgaggaggatgtcaaggcagagactgacgagggcggtcctagtgcc
gttgtcagaaagatggtacgggaagaaactactgaccttgtcaacgacctggctctggaa
gactacgctgccgagattgaaaggaactttggacagcgcaagcgtgccacgcttgagacg
atccgagccgaactggacaacccttacgaggaaattcgacaaatctttgcgctgctgtct
ggtgacgaaatgtttaccatgctcactggtgagacgaaggagtctctctacgaaggcatg
gttgttcctgttaccatcaagcgcgcattcccagaccacattgaagtcaaactcgagtgt
ggaatcgaaggtggtgtgtcagaatcagagttcccagaaggcgttggcagcggcggacag
gagcctcgtcacgtctactcaagtcaccagattgtgcgcgcgcgtatcgtctatctcaac
cgcaaagcccttactgcacagttgtcacttcgagatgatctcatccgacaaccgcaaaag
aagccttatgaccgtgcagctggggagtgggacgaagcgcaagaaatgcaggacaagaag
gcagccgagaaggagaaggaggttgcatctggccgacccaaccgtgtcgtcaaccaccct
ctcttcttctctttcaacacagtccaagcagaagaataccttggtggcaaggaaactggc
gatctcgtcatccggccgtcgtccaagggattcgaccacttggtcgtaacatggaaggtc
tccaacaacgcttaccaacatctcgacgtacttgaaatgaacaaggccaaccaattctca
ctcggcaagcagctcaagattggaaagcacacgtattcggatctcgacgagttgattgtc
aaccacgtcgaggccatggctcgcaaggtcacggagctcacccgagacgagcgattccag
cctggtactcgggaggataccgaaaaatggctagaaaactactgcgaagcgaacccctct
cgctccatgtacgccttttgcagcatgcccaagtaccccggtcacttctggatctgcttc
cagatgagtgccaagggacctaaaggtgcatggggcattaaagtagtgccgaatgcgttt
gagttgcagaagcatgtgtatcctgacatggttgcgctgaagaatgggttcaagatgttg
gttagtgctgcggcgagtaaagcacctgtgaggaggtag
DBGET
integrated database retrieval system
