Bipolaris oryzae: COCMIDRAFT_101818
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Entry
COCMIDRAFT_101818 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K13217
pre-mRNA-processing factor 39
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_101818
Spliceosome [BR:
bor03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
COCMIDRAFT_101818
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_PRP39_N
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
Motif
Other DBs
NCBI-GeneID:
19117942
NCBI-ProteinID:
XP_007690409
JGI:
Cocmi1_101818
UniProt:
W6YZR2
LinkDB
All DBs
Position
Unknown
AA seq
564 aa
AA seq
DB search
MLATGRGSIAQVHYTGEEAAGEINKLLSAVVESEDDFDKWEALVTRASELEGGVTRNSSP
STIELVRNVYDCFLTKFPLFFGYWKKYADLEFSIGGTETAEMVYERGVSCITTSVDLWAN
YCSFKMDTSHDNDIIRELFERGAHFVGLDFQSHPFWDKYIEFEERIQEPANVTKIYSRVL
HIPIYQFSRYYEKFSVLLSNRPVEELASPGTLEKLKAAVQLENQGQPDKPVVEIERQLRS
KITEWYYGAYSKTQQDVTSRWTYEHAIKRAYFHVTELEESELENWRKYLDFEEKLGDFER
IAFLYERCLVACALYDEFWLRYARWMFAQGKEENARIIYMRASCIFVPISAPAIRLNWAR
FEEKLGRTSVARDIYLAMLEEAPEHTETLISLAGLERRHEGNDAAVRLLEQYIDRSNNQI
GGILAAEQARILWQCKSSIGEARQVFKDKHERFLDSREFWKKYLEFEIAQPSPNQEAAHA
RIKAAHDLMRTKGRFSGETSKELSHYYMSYLLNRGGKNAVEEYMQLDKEVNGYVSSAQRA
HSQTPAPQKRKGEPHIVASKRQRK
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgttggccaccgggcgcggcagcattgcccaagtgcactacaccggggaagaagctgca
ggtgagatcaataagctcctcagcgctgtggtggagagtgaagatgatttcgacaaatgg
gaagcgctcgtcactcgcgcctctgagctcgaaggcggcgtcacccgcaactccagtccc
tcgaccatcgagcttgtccgaaacgtctacgactgctttctcaccaagttcccactgttc
ttcggttactggaagaagtatgccgatctcgaattctcgattggcggtacagagactgcc
gagatggtatacgagcgtggtgtctcgtgcatcactacttcagtagacttgtgggccaac
tactgcagcttcaaaatggatacgtcgcacgacaacgacattatccgagagctattcgag
cgaggtgctcactttgtcggtctggatttccagagccacccattctgggacaagtacatc
gaattcgaggagcgtatccaagagccagcaaatgttaccaagatctacagccgtgtattg
cacatacccatctaccagttttctcggtactatgagaagttctccgtccttctctccaat
cgtccagtagaagagttagccagtccaggaacactcgaaaagctgaaagccgcggttcag
ctggagaatcagggacagcctgacaagccagtggttgagattgagcgacagctgcgctcc
aagataactgaatggtactacggcgcgtactcgaagacacagcaggatgttaccagccgc
tggacctatgagcatgccattaagagggcctacttccacgtcaccgagctcgaagagtcc
gagcttgagaactggcgtaagtatctagattttgaagagaagctgggtgactttgagcgt
atcgcgttcctgtatgagcgctgcttggtcgcatgtgctttgtacgacgaattctggctg
cgatatgctcgctggatgtttgcccagggcaaagaggagaatgcgaggatcatctacatg
cgagccagctgtatctttgtgcccatctcagcccccgccatacgcctcaactgggctcgt
ttcgaagagaaactcggtcgaacatctgtcgcccgtgatatctacctggctatgctcgaa
gaggcaccagagcacactgagactcttatctccctggcaggtctagagcgacgacatgaa
ggcaacgatgcggctgtccgccttctagagcagtacattgaccgttccaacaatcagatt
ggcggcatactcgcagcggaacaagcacgtatcctttggcagtgcaagagcagcatcggc
gaagctcgtcaagtcttcaaggacaagcatgagcgattcctagactcacgtgagttttgg
aagaaatacttggaatttgaaattgcacagccttctcccaaccaagaagcagcgcatgct
cggatcaaggcggctcacgacctgatgcgtaccaaaggtcgcttctctggtgagacgtcg
aaagagttgtcacactattacatgtcctatctcctgaaccgtggcggcaagaatgcagtt
gaggagtacatgcagttggataaggaagtgaacgggtatgtatcatctgctcaaagagcc
cactcccaaacccctgcccctcagaaacgaaaaggcgagcctcacattgtagcaagcaaa
cgccagcgcaaatag
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