Bipolaris oryzae: COCMIDRAFT_105310
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Entry
COCMIDRAFT_105310 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_105310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_105310
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_105310
03009 Ribosome biogenesis [BR:
bor03009
]
COCMIDRAFT_105310
03016 Transfer RNA biogenesis [BR:
bor03016
]
COCMIDRAFT_105310
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCMIDRAFT_105310
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
COCMIDRAFT_105310
Spliceosome [BR:
bor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
COCMIDRAFT_105310
Complex C
U4/U6.U5 tri-SnRNP related factors
COCMIDRAFT_105310
Ribosome biogenesis [BR:
bor03009
]
Eukaryotic type
Pre-60S particles
Helicases
COCMIDRAFT_105310
Transfer RNA biogenesis [BR:
bor03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
COCMIDRAFT_105310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
eIF3_p135
ATPase_2
nSTAND3
DUF5388
Motif
Other DBs
NCBI-GeneID:
19118665
NCBI-ProteinID:
XP_007691723
JGI:
Cocmi1_105310
UniProt:
W6ZE34
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MDDDMFEVFEGGPSKDAAPRKTKKRQANGDVKSPVPVEDATMSDAPAEAQDGANENSAAE
TLKKRQKRDAEPEPIVTDDFETEQSREVAAAAGLQAQTQDGQAVVLSHQVRHQVALPPDC
DYVPISEHKPPTEPARTWPFALDPFQQVSIASIQRNESVLVSAHTSAGKTVVAEYAIAQC
LKNNQRVIYTSPIKALSNQKYREFMAEFGDVGLMTGDVTINPTATCLVMTTEILRSMLYR
GSEIMREVAWVVFDEVHYLRDKSRGVVWEETIILLPDKVRYVFLSATIPNSMQFAEWITK
THSQPCHVVYTDFRPTPLQHYFFPAGADGIHLVVDEKGMFREENFQKAMSSIADKAGTDA
KDFMAKRKGKGKDKKTNTGGNREQTDIYKIVKMIMVKSYNPVIVFSFSKRECENYALAMS
SLAFNDESEKAMVTKVFNSAIEMLSEEDRQLPQIQNILPLLRRGVGVHHSGLLPILKETI
EILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWVTPSEFIQMSGRAGRR
GLDDRGIVIMMIDEQMEPAVAKEIVRGQQDNLNSAFHLGYNMILNLMRVEGISPEFMLER
CFYQFQSTAGVSNLEKQLEELEQEKLNTTIIDEAAVKDYYNLRQQLDTHTKDMRDVIMHP
NYCLPFLQGGRLVKVSYKDHDFGWGAVVAFAPRRANKGEVLPPQESYIVDVLLAVGSDNK
FAPVVNDGLPPGVRPPAPGDKGKMEVVPVVLNCIESIGHLRVFLPNDLKSTEQRNNVRKA
LSEVKKRFPDGIAILDPIENMNIKDESFKRLLRKIEVLESRLLSNPLHNSPRLPELYSQY
AKKIAIGEKIKNTKKEIANALSVIQLDELKSRKRVLRRLGFIDDADVVQLKARVACEIST
GDELVLSELLFNRFFNELTPEQCAACLSCFIFEEKTQEVPALKEELAKPYREIQQQARVI
AKISQESKLTLNEEEYLKSFKYELMEVVFAWSKGATFSEICKMTDVYEGSLIRLFRRLEE
LLRQIAQAAKVMGSEELEQKFTAALELVRRDLVAAQSLYL
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgacatgtttgaagttttcgagggcggcccctccaaggatgctgcgccccgc
aagaccaagaagcgccaggccaacggcgatgtcaagtcgccagtgcctgtcgaagatgct
accatgtcggatgcgcccgcagaagcacaagatggcgcaaacgaaaacagcgcagcagag
acactgaagaaacggcagaagcgtgatgctgagcccgagcccatcgttaccgacgatttc
gagacggagcaatcgcgcgaggtcgctgctgccgctggactgcaggcacagacccaagac
ggacaggccgtagtactttcacatcaggtccgacatcaggtcgccttaccgccggactgc
gactatgtccccatttctgagcacaagcccccgacagagccggcgcgcacatggcccttt
gcactggatcccttccagcaggtctctattgcctcgattcaacgcaacgagagtgtcctc
gtgtcagcgcacacttcggctggaaagacagtcgtggcagagtacgctattgcacaatgt
ctcaagaacaatcagcgagtcatctataccagtcccatcaaggccctcagcaaccaaaag
taccgagagttcatggcagagttcggcgacgtcggtctcatgacaggtgatgtcactatc
aacccgaccgccacatgtttagtcatgacgacggagattctgcgatccatgttatacaga
ggttccgaaatcatgcgtgaagtagcttgggtcgtgtttgacgaggtgcactaccttcgc
gacaagtcgagaggtgtcgtgtgggaagagactatcattctgcttccagacaaggtccga
tacgtctttctgtccgccaccattcccaactcgatgcagtttgccgaatggatcaccaaa
acccacagccaaccgtgccacgtcgtttacaccgatttccgtccaaccccgcttcaacac
tatttcttccctgccggcgccgatggtatacatctggtggttgatgagaagggcatgttc
cgcgaagagaacttccaaaaagctatgtcatccatcgccgataaggctggaactgacgcg
aaggactttatggccaagcgcaagggcaaaggcaaagacaagaagaccaatacaggcggc
aacagagagcagacagacatttacaagattgtcaagatgatcatggttaagagctacaat
cccgtcattgtattcagtttcagtaagcgcgagtgtgaaaactacgcgctagccatgagc
tcccttgcgttcaacgacgaatccgagaaggccatggtcacaaaagtgttcaacagcgcc
attgagatgctttcggaggaagatcggcaattacctcagatccagaatattcttcctctt
cttcggagaggtgttggcgttcatcattctggattacttcccattctcaaggaaaccatc
gaaatcttgtttcaggagggcttgatcaaagtactcttcgcgacagagacgttctccatc
ggactcaacatgccggccaagactgttgtattcacaagtgtacgcaagtttgacggagtg
tcccaaagatgggttacgccttcggagtttattcaaatgtctggccgagccggtcgtcgt
ggtcttgacgaccgtggtattgtcatcatgatgattgacgagcagatggagcctgctgta
gccaaggaaattgtacgcggtcagcaggacaatttgaactcggctttccatcttggctac
aatatgattctgaacttgatgcgagtggaaggcatctctcctgagttcatgctggaaagg
tgcttctatcaattccagagcacagctggtgtttccaatttagaaaaacaacttgaggaa
ctagagcaagaaaagctaaacacgaccatcattgatgaagccgctgtcaaagactactac
aatctgcgacagcaactggacactcataccaaggatatgcgcgacgtcattatgcacccc
aactactgcctgccgttcctgcagggtggccggctcgtcaaggtcagctacaaagaccac
gattttggatggggtgcagtcgtagcatttgcccctcgcagagcaaacaaaggcgaagtc
ctaccacctcaagagtcgtatattgtcgacgttctgctcgccgtaggcagcgataacaaa
tttgccccggtagttaacgatggcttgccccctggtgtccggccacctgcgcctggcgac
aagggcaagatggaagtagtacccgtagtcctgaactgcattgagtcaattggccacctc
cgcgtattcttgccgaatgatctcaagtcaacggaacagaggaacaatgttcgcaaggcg
ctcagcgaagtcaagaagcgtttcccagatggtattgccattttggatcctattgagaac
atgaatatcaaggacgaaagcttcaagaggcttctaaggaaaattgaagtactggaatct
cgtctcctgtcgaatccccttcataactcgcctagattacctgaactttacagtcagtac
gcaaagaaaattgccattggtgaaaagatcaagaacaccaaaaaggagatcgccaacgca
ttgtccgttattcagcttgatgagctgaaaagtaggaaacgtgtgctgcgtcgactaggc
ttcatcgacgatgccgatgtcgtccagctgaaagctcgcgttgcctgcgaaatcagcacg
ggcgacgaactagttctcagcgaactgctcttcaaccgtttcttcaatgagctgacacct
gagcaatgcgccgcctgtctgagttgtttcatctttgaggagaagacacaggaagtgcca
gcgctaaaagaagaactcgccaagccttaccgcgagatccagcagcaagccagagtcatc
gccaagatatcgcaagagagcaaactgacgctcaacgaagaggaatacctcaaatcgttc
aaatacgagctcatggaggtcgtgtttgcctggtcaaagggtgctactttctcggagatt
tgcaaaatgaccgacgtctacgaaggcagtctgattcgacttttcaggcgactggaggaa
ttgctccggcagatagcccaggccgccaaagttatgggcagtgaagagctcgagcaaaag
tttactgcagcgctggagctcgttcgtcgggatcttgtcgctgcccagtctctttacctc
taa
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