Bipolaris oryzae: COCMIDRAFT_105408
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Entry
COCMIDRAFT_105408 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_105408
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_105408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_105408
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_105408
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCMIDRAFT_105408
mRNA degradation factors
5'-3' decay
Lsm complex
COCMIDRAFT_105408
Spliceosome [BR:
bor03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
COCMIDRAFT_105408
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Gemin6
Motif
Other DBs
NCBI-GeneID:
19118679
NCBI-ProteinID:
XP_007691767
JGI:
Cocmi1_105408
UniProt:
W6ZDY8
LinkDB
All DBs
Position
Unknown
AA seq
98 aa
AA seq
DB search
MALNAYLNKRVSVLTVDGRTMVGLLHSCDGSMNLVLQEATERIIRPVEEEIPSEEVPLGL
YIIRGDSVAVVGRVDEEIDGKIDWSKVHGEVLGSTKHT
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcactgaacgcctacctgaacaagcgcgtatctgtcctcacagtcgacggacgcaca
atggtcggccttctccactcctgcgacggcagcatgaacctcgtcctccaagaagccacc
gagcgcatcatccgaccggtagaagaggaaatacctagtgaagaagttcccttgggcctc
tacattatccgtggcgatagtgtagcagttgtaggacgtgtggatgaggagattgatggc
aagattgattggagtaaagttcatggcgaggtgctgggaagtacgaaacacacgtga
DBGET
integrated database retrieval system