KEGG   Bipolaris oryzae: COCMIDRAFT_105408
Entry
COCMIDRAFT_105408 CDS       T03125                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
bor  Bipolaris oryzae
Pathway
bor03018  RNA degradation
bor03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bor00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCMIDRAFT_105408
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCMIDRAFT_105408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bor03019]
    COCMIDRAFT_105408
   03041 Spliceosome [BR:bor03041]
    COCMIDRAFT_105408
Messenger RNA biogenesis [BR:bor03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCMIDRAFT_105408
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     COCMIDRAFT_105408
Spliceosome [BR:bor03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    COCMIDRAFT_105408
SSDB
Motif
Pfam: LSM Gemin6
Other DBs
NCBI-GeneID: 19118679
NCBI-ProteinID: XP_007691767
JGI: Cocmi1_105408
UniProt: W6ZDY8
LinkDB
Position
Unknown
AA seq 98 aa
MALNAYLNKRVSVLTVDGRTMVGLLHSCDGSMNLVLQEATERIIRPVEEEIPSEEVPLGL
YIIRGDSVAVVGRVDEEIDGKIDWSKVHGEVLGSTKHT
NT seq 297 nt   +upstreamnt  +downstreamnt
atggcactgaacgcctacctgaacaagcgcgtatctgtcctcacagtcgacggacgcaca
atggtcggccttctccactcctgcgacggcagcatgaacctcgtcctccaagaagccacc
gagcgcatcatccgaccggtagaagaggaaatacctagtgaagaagttcccttgggcctc
tacattatccgtggcgatagtgtagcagttgtaggacgtgtggatgaggagattgatggc
aagattgattggagtaaagttcatggcgaggtgctgggaagtacgaaacacacgtga

DBGET integrated database retrieval system