Bipolaris oryzae: COCMIDRAFT_1981
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Entry
COCMIDRAFT_1981 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
bor
Bipolaris oryzae
Pathway
bor03022
Basal transcription factors
bor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
COCMIDRAFT_1981
09124 Replication and repair
03420 Nucleotide excision repair
COCMIDRAFT_1981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bor03021
]
COCMIDRAFT_1981
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_1981
Transcription machinery [BR:
bor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
COCMIDRAFT_1981
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
COCMIDRAFT_1981
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
19119978
NCBI-ProteinID:
XP_007684264
JGI:
Cocmi1_1981
UniProt:
W6ZBE0
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MADAAAQYKKQDGTVSISADGKTVAWRSASGALPPLSIAIADIANLQQTPATSAKASIKI
VVKEPSPQAGNHTLTFTSAAARDDQQTITGALRKWIESSKQQAAPSPAPVAAKAGEGDGG
PSAAMAMAQTVAAPTKSDQDTYDDAKLLADTALQMSLLNSSPALRQRFDRALLEKPDSVS
VLQFSMQFWSTRVHMLRSHATERSQATGTYNVLSVIKSKSVNGALMLNLTKEQIELLFRQ
HPIVQKAYNENVPPLTEGDFWERFFHSRLMKKLKGERIQDKDVLDPKLDKYLSYDETADS
SLDLLAASIPTFINIEANENNHSQKQGNRPDFTMNPAHYEKAPILRVLNRMSEKMMKEVP
PSDANRHGPAGVDEETYKELQLRDLQLADDDNRVVLKVHDQSRFFSAGQSVHTSTSAATY
TKRTPAEALSTLHQDLRKFDGNTGQASKVDLHSLIEVNDESSSDEEESVPKKKTKVGSRS
SRKAASSQILTALKKRHLHNDDYSSSKSIPTAERAKELHVSEAVLDNLTMTHNTTVEFLH
YFWAVFYSGDPDRANEIARLIETLDKSLDRIKAVADMAEAERAARIEHARKENEFSNQRE
RKKRKFDPEAIRGGAKAVNQIVDPLLRAIDAARRQYQTALREQVARSSSNVAL
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctgccgcacagtacaagaagcaggacggaactgtctccatctctgccgat
ggcaagacggtggcttggaggtcggccagtggcgcgcttcctcccctctcaatagctata
gcagacatcgcaaatctgcagcaaactcctgctacctccgcaaaggcctctataaagatc
gtcgtcaaagagccatcgccccaagccggtaaccacacccttacatttacctcggccgcc
gctcgcgacgatcagcaaaccataaccggcgccctgcgcaaatggatcgaaagctcaaag
caacaggctgctccttcacctgcgccggtagcggccaaggcaggtgaaggcgatggcggc
ccatctgccgctatggccatggcccagaccgttgcagcaccaaccaaaagcgaccaagac
acctatgacgatgcaaagctgcttgccgacacggccctacaaatgtcattgctcaattcc
agtccggctcttcgacaacgttttgatcgcgctcttcttgagaaacctgattctgtctcg
gtcctgcaattctcaatgcagttctggtcaacccgggtgcacatgttgaggtcgcatgcc
acagagagatctcaggccacaggaacctataatgtcctgtctgttatcaaatcaaaatca
gtcaacggtgctctgatgttgaacttgaccaaagagcaaatcgagctcctcttcaggcag
cacccaatagtccaaaaagcatacaatgaaaatgttcccccactcaccgagggtgacttt
tgggaaaggttttttcatagtcgattgatgaaaaagctcaagggcgaacgcatccaagac
aaggacgtgcttgatcccaagctggacaagtacttgagttacgacgaaacagcagatagc
tccttggacctgcttgctgcctctatccctacttttatcaatattgaggccaacgaaaac
aaccacagccaaaaacaaggtaaccggcctgacttcaccatgaatccagcccattacgaa
aaggcgcccattctccgcgtcctgaatcgcatgagcgagaagatgatgaaggaggtgcca
ccttccgatgcaaatcgacacgggccagccggggtcgatgaagagacatacaaggagctg
cagctgcgtgatctccagcttgccgatgacgacaatcgagtagtactcaaggtacacgat
caaagtcggttcttttcagctggacaaagtgtgcatacatcgaccagtgctgcgacatac
acgaagcgcactcctgcagaggcattatccactctgcaccaagatcttcgcaagtttgac
ggcaacactggccaggcttctaaagttgatctgcattcccttatcgaagtcaacgatgag
agcagtagcgacgaagaggaatctgttcccaaaaagaagacaaaagtcggcagtagatca
tcacggaaagcagcctcttcacaaatcttgacggctctcaagaagcggcatctgcacaat
gatgactattcttcatccaagtctatccctaccgccgagcgagcaaaggagcttcatgtt
tctgaagctgtcctcgacaatttgaccatgacccacaataccactgtcgaatttttacac
tatttctgggcagtgttttactcgggagaccccgaccgtgcaaacgagattgcgaggctc
attgagacactcgacaaatcgcttgaccgcatcaaggctgttgctgacatggcagaagca
gagcgtgcggccaggatcgagcacgcgcgaaaagaaaacgagttctctaaccaaagagaa
cgcaaaaagcgcaagttcgaccctgaggctattagaggaggagcgaaggctgtcaatcaa
atcgtagatcctctgcttcgagcgatagacgctgcacgtcgtcaataccagacggcactt
cgggaacaagtagcgcgtagctcctcaaatgttgccctgtga
DBGET
integrated database retrieval system
