Bipolaris oryzae: COCMIDRAFT_2256
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Entry
COCMIDRAFT_2256 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bor
Bipolaris oryzae
Pathway
bor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCMIDRAFT_2256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bor03021
]
COCMIDRAFT_2256
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_2256
Transcription machinery [BR:
bor03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
COCMIDRAFT_2256
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
COCMIDRAFT_2256
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
Pfc11_Clp1_ID
VHS
zf_PCFS4
DUF7340
Motif
Other DBs
NCBI-GeneID:
19120275
NCBI-ProteinID:
XP_007684493
JGI:
Cocmi1_2256
UniProt:
W6ZGJ8
LinkDB
All DBs
Position
Unknown
AA seq
692 aa
AA seq
DB search
MSLPAAEVAADFRDALQDLRMNSRPEISNLTLIAKENTEYAEAISNELQKHIQSTRPEWK
LPALYVLDSIVKNVGTPYTVYIGRNLYRTFMDAYLVMDQATRKNMEGLLKTWKMPVPESM
DPRPVFSADVTQDIENALAKFHAAQQQVRPQHALPPRPPSLNVAWRGTSTPPQNGPRYAA
PNDPRARPSYPSTPQYGSTAHAPTPPVSYAQPQQPPSPMSSIDLAGLKAEVTQLISTTQN
TFAQNPADAALRTKLSALLSLKQILDTQTLPPQQLEAVRQQIRALAPPPTPTPSFAPSTP
VYPPQQTVAPGYPAQFPAVTASPVNVPPNVAQLLAGFRPQQSTPQPAPTPTPPVLNLAEL
LKRVSSPAQSSSVPAPAPFQPPFQAFPPPISTPIPAPQSAPPAQSSTPTTNLAALLAQFS
KPAAAQPSVQPTSVQSTPVPQLPLQPAAPPPALGSAEWLLKALSSVSGPTPVNGVPNSLQ
QGTEQSVAPVGLLDQIELTTASMKKPRLHLISHLYEAKPNICATCGRRFENTAEGKEKKA
RHMDWHFKVKDPDAAKRGVHRSWYIPEKEWIEYRELDETAPNQSNHSSSGNNAAKPKKQT
KDRYVSVPQDVTLQQAPCPICQEKFETQWNVEANDFVWMDALSVGGKVYHATCFEEYSKG
IGIEMPGTPDSVLGKRKADIGTNGEGKKVKAY
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccagcagctgaagtagcagccgattttcgggacgcactgcaagatttgagg
atgaatagcaggcccgagataagcaatctaaccctcatcgccaaagaaaatacagagtac
gccgaagctatatccaatgagctccagaaacatatccaatcgactcgtcctgaatggaaa
ctccccgctctttatgtgcttgattccattgtcaagaatgtcggaaccccatatactgtc
tacatcggtcgcaacctgtaccgaacattcatggatgcttatctggtcatggaccaggcc
acccgcaagaacatggaaggcttgctcaagacgtggaagatgcctgtgcccgagtctatg
gatccacgcccagtgttctcagccgacgtgacgcaagatatcgagaacgcgctggctaag
tttcatgcagctcaacagcaggtccgaccgcaacatgcgctcccgcctcggcctccatcg
ctcaacgtggcttggagaggtacatctacgccgccgcagaatggtccccgttatgctgcc
cccaatgacccgcgtgctcgaccatcatacccatcgactcctcaatatggatctacagca
catgcccctacacctccggtgtcctacgcgcaacctcagcagcctccttcgcccatgtcg
tccattgatttggctggattaaaggcggaagtcactcagctaatcagcactacacagaac
accttcgcccaaaacccagccgatgctgccctgcgtacgaaactttcggcactcttatct
ctcaagcaaatcttggacacacagactctaccaccacaacaactggaggctgtacgtcaa
cagattcgagccctagcacctccgcccactccgacaccctcgtttgcaccgtctacacca
gtatatcctccgcagcagacagtggcacccggttaccctgctcagtttcccgctgtgact
gcttcgccagtcaatgttccaccgaatgtggcacaacttcttgcgggctttagaccacaa
cagtcaacaccacaacctgctccgaccccaaccccacctgttttgaacctggcggaattg
ctgaaacgtgtatcatcgcctgcacaatcaagttctgtacccgctccagctccattccag
ccaccgtttcaagcattcccgccgcctatttctacaccaatacccgcaccccaatccgct
cctccagcacagtctagcacaccaaccaccaacttggctgctttgcttgcccaattcagc
aaacctgctgctgcgcaaccctcagttcagcctacatctgttcaaagcactcctgtacct
caacttccattgcagcctgcggctcccccgccagcccttggcagtgctgagtggcttctc
aaagccctgagcagtgtatctggtcccacgcctgtgaatggagtccccaattcactccag
caaggaactgaacaatcagtggcgccagttggcttgttggaccaaattgaactcactacc
gcatcgatgaagaaaccccgtcttcacctcatctcccatctatatgaagccaaacccaac
atctgcgccacttgtggtcgccggttcgaaaacacggctgagggaaaagagaagaaggct
cgccacatggactggcacttcaaggtcaaggacccagacgctgccaaacgaggcgtacat
cgcagctggtacattccagagaaggaatggatcgaatatcgcgaacttgacgaaaccgcc
cctaaccagtctaaccattcctcttcaggcaacaatgcagccaagccgaagaagcagacc
aaggaccgctatgtcagcgttccgcaggacgtgacacttcagcaagcaccctgcccgatc
tgccaagagaagtttgagacacaatggaacgtggaagcgaatgatttcgtatggatggac
gccctaagtgtgggcggcaaggtgtaccatgctacatgtttcgaagagtatagcaaggga
atcggtattgagatgcctggcacgccagactctgttcttgggaaaaggaaggccgatatt
ggaacgaacggagagggcaagaaagtcaaggcttactag
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integrated database retrieval system
