Bipolaris oryzae: COCMIDRAFT_26451
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Entry
COCMIDRAFT_26451 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_26451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_26451
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
COCMIDRAFT_26451
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
COCMIDRAFT_26451
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
Rrp40_N
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
19120935
NCBI-ProteinID:
XP_007688125
JGI:
Cocmi1_26451
UniProt:
W6Z0Q3
LinkDB
All DBs
Position
Unknown
AA seq
344 aa
AA seq
DB search
MPISVLPFSALPPPRRDANDESDSDIEMGDDDLAISSSKSIVTPGEHITSDPQWMRGHGT
YIPSQPAGSTTIISTVAGTLHKTNKLLSVQPLRARYQPEIGDLVVGRIMTVGTKKWNVDI
AAPMLANLPLSSINLPGGVLRRRTTVDELNIRTFFQEGDLLVAEVQSLHQDGTASLHTRS
LKYGKLRNGVFTSITGAGGGILSRKGGVVRSRRQVFTLNTAAGEIDIILGVNGYVFVCKH
ITTSADAKEVGINSLDESAIETLYSSQNDDIEPGLTREILMVSTLIRGMVACGTKVDEDR
IVKVYEGAVELEAEEKALGTMERGPGGTALVEAVLARLELGGGE
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgccaatctctgtcctaccatttagcgcactgccgcctccaaggcgcgatgcaaacgat
gagtctgactccgatattgaaatgggcgacgacgatcttgcgatctcgtcttccaaatcc
atcgtcacgcccggtgaacatataacctctgatccacaatggatgcgtggccatggcaca
tatattccctcacagccagccggatcgacaaccataatatccaccgtggcaggcaccttg
cacaaaactaacaaactgctatccgtgcaaccactacgcgcccgctaccaacccgagatt
ggcgacctagtcgtcggccgcatcatgaccgtaggaaccaaaaaatggaacgtagacatc
gccgcgcctatgctagccaaccttccactctccagtatcaacctccccggcggcgtgctc
cgccgccgtacaaccgtcgacgagctcaacatccgaaccttcttccaagaaggcgatctc
ctcgtcgccgaagtccaaagtttacaccaagacggcaccgcctcgctgcacacacgctcc
ctcaaatacggcaaactccgcaacggcgtcttcaccagcatcacgggtgcaggcggcggc
atcctcagccgaaaaggtggcgtagtccgcagccgccgccaggtcttcacactaaacacg
gcggccggcgaaatcgacattatcctcggcgtcaacggctacgtctttgtctgcaaacac
atcaccactagcgccgacgcaaaggaagtcggcatcaacagtctcgacgagtccgcaatc
gaaacgctgtattcgagccaaaacgacgatatcgaacccggtcttacccgcgaaatcttg
atggtgagcaccctgattcgcggcatggtggcgtgtgggaccaaggtggatgaggatcgg
attgttaaagtttacgagggcgcggtggagctggaggccgaggaaaaggcgctggggact
atggagcgggggccgggtggcacggcgctggtggaggctgtgctggcaaggttggagctt
gggggtggggagtag
DBGET
integrated database retrieval system