KEGG   Bipolaris oryzae: COCMIDRAFT_26451
Entry
COCMIDRAFT_26451  CDS       T03125                                 
Name
(RefSeq) hypothetical protein
  KO
K03679  exosome complex component RRP4
Organism
bor  Bipolaris oryzae
Pathway
bor03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bor00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCMIDRAFT_26451
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bor03019]
    COCMIDRAFT_26451
Messenger RNA biogenesis [BR:bor03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     COCMIDRAFT_26451
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     COCMIDRAFT_26451
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 RRP40_S1 Rrp40_N ECR1_N_2
Other DBs
NCBI-GeneID: 19120935
NCBI-ProteinID: XP_007688125
JGI: Cocmi1_26451
UniProt: W6Z0Q3
LinkDB
Position
Unknown
AA seq 344 aa
MPISVLPFSALPPPRRDANDESDSDIEMGDDDLAISSSKSIVTPGEHITSDPQWMRGHGT
YIPSQPAGSTTIISTVAGTLHKTNKLLSVQPLRARYQPEIGDLVVGRIMTVGTKKWNVDI
AAPMLANLPLSSINLPGGVLRRRTTVDELNIRTFFQEGDLLVAEVQSLHQDGTASLHTRS
LKYGKLRNGVFTSITGAGGGILSRKGGVVRSRRQVFTLNTAAGEIDIILGVNGYVFVCKH
ITTSADAKEVGINSLDESAIETLYSSQNDDIEPGLTREILMVSTLIRGMVACGTKVDEDR
IVKVYEGAVELEAEEKALGTMERGPGGTALVEAVLARLELGGGE
NT seq 1035 nt   +upstreamnt  +downstreamnt
atgccaatctctgtcctaccatttagcgcactgccgcctccaaggcgcgatgcaaacgat
gagtctgactccgatattgaaatgggcgacgacgatcttgcgatctcgtcttccaaatcc
atcgtcacgcccggtgaacatataacctctgatccacaatggatgcgtggccatggcaca
tatattccctcacagccagccggatcgacaaccataatatccaccgtggcaggcaccttg
cacaaaactaacaaactgctatccgtgcaaccactacgcgcccgctaccaacccgagatt
ggcgacctagtcgtcggccgcatcatgaccgtaggaaccaaaaaatggaacgtagacatc
gccgcgcctatgctagccaaccttccactctccagtatcaacctccccggcggcgtgctc
cgccgccgtacaaccgtcgacgagctcaacatccgaaccttcttccaagaaggcgatctc
ctcgtcgccgaagtccaaagtttacaccaagacggcaccgcctcgctgcacacacgctcc
ctcaaatacggcaaactccgcaacggcgtcttcaccagcatcacgggtgcaggcggcggc
atcctcagccgaaaaggtggcgtagtccgcagccgccgccaggtcttcacactaaacacg
gcggccggcgaaatcgacattatcctcggcgtcaacggctacgtctttgtctgcaaacac
atcaccactagcgccgacgcaaaggaagtcggcatcaacagtctcgacgagtccgcaatc
gaaacgctgtattcgagccaaaacgacgatatcgaacccggtcttacccgcgaaatcttg
atggtgagcaccctgattcgcggcatggtggcgtgtgggaccaaggtggatgaggatcgg
attgttaaagtttacgagggcgcggtggagctggaggccgaggaaaaggcgctggggact
atggagcgggggccgggtggcacggcgctggtggaggctgtgctggcaaggttggagctt
gggggtggggagtag

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