Bipolaris oryzae: COCMIDRAFT_26890
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Entry
COCMIDRAFT_26890 CDS
T03125
Name
(RefSeq) polysaccharide lyase family 4 protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
COCMIDRAFT_26890
Enzymes [BR:
bor01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
COCMIDRAFT_26890
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Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
BDI_1685-like_C
Motif
Other DBs
NCBI-GeneID:
19121016
NCBI-ProteinID:
XP_007688624
JGI:
Cocmi1_26890
UniProt:
W6ZML5
LinkDB
All DBs
Position
Unknown
AA seq
547 aa
AA seq
DB search
MRCLAALTALLLAPTAVFAAWGWTDDGKNYVIDTNANLVVKVSKSNADMTSIKYRGVEYN
GQNGKNSHVESGLAPGTVTIKQYTSPANIIKVTMKVGTLTHTLVFRYGNPNVYIFMNKRD
TSITVSRYIVRIPANIFTNNPNEDTDWVPNNAPAIESGDINGVNGQTWSKHYSGKKYGRT
IDYDYVGYTNANVGMYLIRSNHEKASGGPFFRSLIRRGGDGGPDLYDIYQYNMGHTDPMR
LGLQGPSVLHFTDNGAAPNHNLFARNANWDWFDSLEIEDWVPASRRGAVAGVGLANMKSG
FQYVVGLKNDQAQYWTIATGAWRIGNALPGTYTLTVYKGELEVHTSTVTISAGSTATRNT
ITLVDPNDTPAIWRIGDWDGTPRGLLNFQDTPMKPTYMHPSDSRLAKWDAGNFIIGTTPI
SSFPAYIWKDINNDHLVYFRLTDAQLARPAKIRLGVTQGQAGGRPTVSVNAWAAKLPTDK
GQGDTRSLTVGTYRGNNYVYEFEVPASAWVASAREYQILKITVISGKTAAGYLSPAVSFD
ALELVGL
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgtctcgccgccctcacggcgttgcttcttgcgccgaccgctgtctttgcggct
tggggctggacggatgatgggaagaactatgttattgatactaacgctaacctggtggtc
aaagtcagcaagtccaacgctgacatgacttcgatcaagtaccgtggcgtcgagtacaat
ggtcagaatggaaagaactcgcacgtggagtctggacttgcacccggcactgtcaccatc
aagcagtacacttccccggccaacattatcaaagttaccatgaaagttgggaccctgact
catacactcgtctttcgctatggcaacccgaacgtgtacatttttatgaataagagggat
acgagcatcaccgtttcacgttatattgtccgcatccctgcaaacatcttcacgaacaac
ccaaacgaggatactgattgggttcccaacaatgcacctgctatcgagtctggtgatatc
aacggcgtcaacggtcagacatggtcgaagcattactctggaaaaaagtatggtcgcact
atcgactacgactatgtcggctacaccaacgccaacgttggcatgtacctgatccgctca
aatcacgaaaaggcgtctggaggtcctttcttcagaagtctcatacgccgtggtggtgac
ggcggaccggatctctacgatatttaccagtacaacatgggccacaccgaccccatgcga
cttggcctgcaaggcccttcagtccttcacttcaccgacaacggtgcagcacccaaccac
aacctctttgcccgcaacgccaactgggactggttcgactccctcgaaattgaagactgg
gttcccgccagccgccgcggcgccgtcgcgggtgtcggcctcgccaacatgaagagcggc
ttccagtacgtcgtgggcctgaaaaatgaccaagcccaatactggaccattgcaaccggc
gcctggcgcatcggcaacgccttgcctggcacttatactctgaccgtctacaaaggcgaa
ctcgaagtccacaccagcaccgtaaccatctcggccggctccaccgcaacccgcaacacc
atcaccctcgtcgaccccaacgacacccccgccatctggcgcatcggcgactgggacggc
actccgcgcggcctcctcaacttccaagacacccccatgaaacccacctacatgcacccc
tccgactcccgcttggcaaaatgggacgcaggcaacttcatcatcggtaccacccccatc
tccagcttccccgcgtacatctggaaggacatcaacaacgaccacctcgtctacttccgc
ctcaccgacgcccaactcgcgcggcccgcgaagattaggctgggtgtgacgcagggccag
gcggggggcagaccgaccgtgtcggtgaatgcgtgggctgccaagttacccacagataag
gggcaaggggatacgaggagtctgactgtggggacgtatcgtgggaataattatgtctat
gagtttgaggtcccggcgagtgcgtgggtggcgagtgcgagggagtatcagattctcaag
attacggttatatcggggaagacggccgctgggtatttgagtccggcggtgagttttgat
gcgcttgagttggtggggttgtaa
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