Bipolaris oryzae: COCMIDRAFT_28260
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Entry
COCMIDRAFT_28260 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
bor
Bipolaris oryzae
Pathway
bor03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
COCMIDRAFT_28260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_28260
03036 Chromosome and associated proteins [BR:
bor03036
]
COCMIDRAFT_28260
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
COCMIDRAFT_28260
Chromosome and associated proteins [BR:
bor03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
COCMIDRAFT_28260
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nucleoporin_FG
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
19121273
NCBI-ProteinID:
XP_007690221
JGI:
Cocmi1_28260
UniProt:
W6Z058
LinkDB
All DBs
Position
Unknown
AA seq
2038 aa
AA seq
DB search
MSFGGFGGFGSNNNNNTQSTGFGGFGSTNNNTTDLSRATPSMRIATSPRPCPRTVSNVPH
ASGFGSNTNTGSSIFGASNNATTGSTMFGSNNASSSSPFGGGGGGFGANTNNNTAFGSKP
FGSSTTGGGLFGGGGATGGSTFGGFGSTNNNTTTSAFGSNTANTGGGLFGQNKTTGFGTS
TTGGSGLFGGGSTGGGFGSTNTTPATGGFGSNTGSAFGGGSNPPANNGTANTPFQPFSEK
DGTTGNAQYQTITFQQPYQNYSLEELRVADYNQGRRYGNGNGQAGAFGQSTGFGGFGSNT
ATTGSTGFGATNNTGSGLFGGGSNTTTTSAFGQNTGSAFGSTNNNASGGLFGQSKPATGG
LFGSTNNTSTGTTGGLFGGGSTTNTTGGFGSGGGGFGSSTTNSGGLFGQNKPATGGGLFG
GGSTTNTTSTPFGGSTNTGGAFGQSNNTGGGLFGQSNQASSTPAFGATNTATNTGGGLFG
GGSTTGGAFGQNNQASTQNTTSGGLFGGGGFGQNNQQNQQKPGGLFGGASTGTTGGGLFG
GQTNQSQPASGGLFGGSTANNNSTGGGLFGQKPATGGTSLFGGGNTSTTGTSGGGLFGNL
GTQNNQQNNTGGGLFGGQNNNQQKPGGLFGGSTTNTNTGGGLFGGGLGQQNNNQQSTLGG
SLFASQNQQPQQQQQNGNSLFGASGSSLLNTSMNTNPYGNDALFAGLGTPTQSPGPLATP
LSSSQKNKKNAILPQHKLNPAASTRLLTPQTKRGGYGFSYSTYGGSAASSQSGTPSLGGS
LFANGGLSRSLGKSISASNLRNNFAADTSILAPGAFSNTGRNFGNGGLKRLNINRNINAA
RTPLFDEPSQKRVSFAAGETVNGNTNGETALIVRQDEEEGSPKAGSHDESSDNSPPEMQK
VNGTELARVYEDNALGPKSMSSVNIIPGQDPKPGEYWSSPPMEKLRKMSKQELKSVPNFV
VGRQHIGEIKFNHGKPVDLSEVNLDKLFGDIVQLNPRNATVYGETCTCLPKPPLGSALNQ
PSLIVLGNSWPRNRAGKKDVKHLERLKRVAGTTFVNYNQATGEWTFTVPHFSSYGLDYDD
YSEDEDEDASSELSDVPDTPLDQQHRSSQMTSTPQDDSFASPTQSSPDDTFDFKKGMRGG
RTNVPGGFGDDSLYDDEEEMQDTHGESFLGQRSVGSLDRQPDADYYEESESELARDQNMA
DSVSSPIQTTEQHAAKDDISRGSLMPKSILKAGQFLKPATGTPSKAQPVFDDDWANQLQR
TISPKKQDRQALRESQGHVLREQELQPTNFSQSFRARPMTTAIDLMDSLFGETEKQHFPK
RGGHGIELPYSKRPKTSSDLDQLNETEKDFYACSKPHFSEGNILVYGNKGPAHLEGGVFP
TAQEPLVGAAKDIRFAKMPTFNDAAPETLSVQKQHTKIYTPAGIPSAKLMTDPAPVEFSS
MAKAVALDTTAGVQEQQAWQLLSLLFDDADRVPAGIQVEEMKLYRKERLSEFWRLLVWDD
AQKHVQAAASPEERALAHLSCNNVADACHTLLDGLDLRLATMIAQIGGDETMRQSMSAQI
DEWRRLDTLSEMEDAHRALYELLAGNCTRSEGKTGAGSENRASTFNISNRFGLDWRRAFG
LRLWYGTLANEPIEMAIAQFADVVRDGREVVKPVPWFVKDRVDMGWKDPAPEHREDLLWG
ILKLYASAKMDLPANIENVLAPENVSGNPFNARLSFQLFQLFKSRQEDVSEADERKVAMP
TVRSEDNSDDRFRRSLQSWTAPGAADDVQAADPLVELSDKITLTYASSLHTPELWTTAIW
VYTHLSFAPMREHYIRSLVTQFSGLFSLEDSNPTYTHLTADLHVPSTWLHAAAALHAKSS
GDALREATHLIKADEFEEAHEVLCRKVGPEAIISRDYDALRELMAGFVAESNVPLPREPV
QGWAQGGQIYFDYIELIDLTGARSSYRVDEELESRVEELLVKLQRALEIAGRDRLGACGL
EERVALMDIAGTVANLITKNQRTNRNSILKLPLTEDLWLKHSIDLSTSYYRNLLVTSR
NT seq
6117 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcggcggtttcgggggctttggctccaataacaacaacaacacccagtccact
ggtttcggcggatttggatcaactaataacaacacgactgatctttcccgcgcgactcct
tcgatgcgcatcgcgacatcgccacggccttgtccaagaaccgtgtctaacgtgcctcac
gcctcaggcttcggctccaacacgaacactggctcaagcatattcggcgcaagcaataat
gccactacgggcagcacaatgtttggatccaacaatgccagctcgagctctccttttgga
ggaggcggaggtggctttggcgccaataccaacaacaacacggcctttggctcaaagcct
ttcggcagctcaacgacaggcggtggtctctttggaggtggtggcgctactggcggcagc
acgttcggagggtttggatcaaccaacaacaacaccaccacttcagctttcggcagcaac
accgcaaacactggaggcggcctcttcggccaaaacaagacaaccggcttcggcacttcg
acgactggaggcagtggattgtttgggggtggcagtactggcggcggatttggctccacc
aacaccacccccgctacgggcggcttcggctccaacactggcagcgcttttggtggaggc
agcaaccctcctgcaaacaacggtaccgccaacactcctttccaacccttctctgagaaa
gatggaactacgggcaacgcgcaataccagaccatcacctttcagcaaccatatcagaat
tactcccttgaagaactacgtgtagccgactacaaccaaggccgacggtacggcaatggc
aatggtcaggctggagcgttcgggcagagtactggattcggaggctttggtagtaacacc
gccaccactggctccacaggttttggagcaaccaacaacactggtagtggcttgttcggc
ggtggcagcaacactaccacgacgtctgcatttggtcaaaacacaggctcagcctttggc
tcaaccaacaacaacgctagtggaggtctatttggacagagcaagcctgctactggagga
ctcttcggttccacaaataacacctcgactggaacaacgggcggtctcttcggtggcgga
tctactaccaacactacaggaggctttggatcaggaggtggtggtttcggctcgtcgacc
actaacagcggtggtctgtttggtcagaacaagcctgcgactggtggaggtctttttggt
ggcggcagcactactaacaccacctcgactccattcggtggctcgacaaacactggtggc
gcttttggccaatccaacaacactggtggcggtctgttcggtcaatccaaccaagcctct
tctacaccagcctttggcgctaccaacactgctaccaacactggcggtggcctgtttggc
ggcggtagcactactggtggagcatttggacagaacaaccaagcttcaacacaaaacacc
acttctggcggtctcttcggcggtggtgggttcggtcagaacaaccaacagaaccagcaa
aagccaggcggcctgtttggcggcgcaagcactggcactacaggaggcggtcttttcggt
ggccaaacgaaccagagccagcccgctagtggcggactgtttggaggttctactgcgaac
aacaacagtactggaggcggtctctttggccagaagcctgctactggcggtacttcactg
tttggaggtggcaacacctctactacaggaacatctgggggaggtttgtttggaaacctc
ggtacacaaaacaaccagcaaaacaacactggaggcggtctttttggtggtcagaacaac
aatcagcagaagcctggcggtctgtttggcggttccacaaccaacacaaacactggcggc
ggtttgtttggcggcggtctcggccagcaaaacaacaaccagcagtcaaccctgggaggc
tctctctttgccagccaaaaccaacagccacaacaacaacagcagaatggcaacagtcta
ttcggtgcctcgggaagttctctgctgaacacctccatgaacaccaacccctatggcaac
gacgccttgtttgctggactgggaactcctactcaaagccctggcccacttgccactcca
ctttctagcagccaaaagaacaagaagaatgccatactacctcagcataagctcaatcca
gctgcatcaactcgtctcctgactccgcagactaagaggggcggctacggattcagctac
tcgacatacggtggctcagctgcttccagccagtctggcactcctagcctgggtggaagt
ctcttcgccaacggcggtctttcccggtcactcggaaagagcatatctgctagcaatctc
cgcaacaacttcgctgcagacactagcatcctggctccgggtgcattctcgaacaccgga
cgcaactttggtaatggtggcctgaaacgactcaacatcaaccgcaacatcaacgctgcc
cgtactccactgtttgatgagccatcacagaagcgcgttagttttgctgcgggtgaaact
gtcaacggcaacacgaacggagagactgcattgattgtcagacaggatgaggaagagggt
tcacccaaggcaggaagccatgacgaaagcagcgataactctcccccagaaatgcaaaag
gtcaacggtacggagctcgcacgtgtctatgaagacaatgcgcttggccccaagtcgatg
tcatcggtcaatatcatacctggacaggaccctaagccgggcgagtactggtccagccca
cccatggagaaactgaggaagatgagcaagcaggaactgaagagtgtccccaacttcgtt
gtgggacgtcagcacattggtgagatcaagttcaaccatggcaagcctgtcgatctatcc
gaagtcaaccttgacaagctattcggcgacattgttcagctcaacccccgaaacgccact
gtttacggtgagacctgcacctgcctgcctaagcctccgcttggttctgctctgaaccag
ccctctctgattgttctcggcaattcctggccacgcaacagggctggcaagaaagatgtc
aagcacctggagcgactaaagcgagttgctggaactactttcgtcaactacaaccaagcc
actggcgaatggacctttactgtcccacatttctcgtcatacggtctggattatgatgac
tacagcgaggatgaggacgaggatgcttcaagcgagcttagtgatgtccctgatacaccc
ctggatcagcagcatcgctcaagccaaatgaccagcacaccacaggatgactcatttgcc
agtcctacccagtccagccctgatgacacctttgatttcaagaagggcatgcgtggaggg
cgcactaacgtgccaggtggctttggagacgacagtctgtatgatgacgaggaggagatg
caagacacccacggcgagtcttttttagggcagcgctccgtgggttcgcttgatagacag
cctgatgctgactattatgaagaaagcgaatcggaattggcgcgtgaccagaacatggcg
gattctgtgtcgagcccaattcaaaccacggagcaacacgccgccaaggacgacatttcc
agaggctcgttgatgccaaaatctattctcaaggctggccaatttctcaagccggcaaca
ggcacaccttccaaagcacagccagtgttcgatgacgattgggcaaatcagctacaacgc
acgattagtcccaagaagcaagatcgacaggcccttcgcgaaagtcagggccatgtgctg
cgagaacaagaactccaacccacaaacttctcgcagtctttccgtgctcgtcctatgact
acagccattgatctcatggactctcttttcggtgagacggaaaaacaacattttcccaag
cgtggtggacatggtattgagttaccttattccaagcgaccaaagacctcatccgacctc
gaccagctgaatgagaccgaaaaagacttttatgcctgcagcaaaccacacttcagcgaa
ggaaacatcctcgtctacggcaacaaaggtcctgcacatctcgaaggcggtgtctttccg
actgctcaagaaccacttgttggcgctgccaaggacatccgatttgcgaaaatgcccacg
ttcaatgatgctgcacccgaaactctgtctgtccaaaagcaacacacaaagatttacact
ccagccggtattccctcagcgaagcttatgaccgaccctgctccagtggaattttccagc
atggcaaaagctgtcgcacttgacaccactgcaggtgttcaagagcaacaggcctggcaa
ctgctatcgcttttgtttgatgatgccgacagggtccctgcgggtatccaagtggaggaa
atgaagttgtatcgaaaggagaggctttcggagttctggaggctactcgtatgggacgat
gcccagaagcatgtccaagcggctgcatctcctgaggagcgtgctcttgcgcacctaagc
tgcaacaatgttgctgatgcttgtcacactctgctcgacggcctggacctccgccttgct
acgatgattgctcagattggcggtgatgagacgatgaggcagagcatgtctgctcaaatt
gatgagtggcgtcgccttgatacactttccgaaatggaagacgctcatcgtgcattgtac
gagcttctcgctggcaactgcacgcgatcagagggcaagactggagcaggcagcgaaaat
cgggcttctaccttcaacatctccaatcgtttcggtctcgactggcggcgcgctttcgga
ctgcgcttgtggtacggcacgcttgcgaatgagcctattgaaatggccatcgcccagttt
gcggatgtagttagggatggcagggaagttgtcaagcctgtcccttggttcgtcaaagac
agagtcgacatgggctggaaagatcctgctccggagcatcgagaagatctcctttggggt
atcttgaagctctatgcctctgcgaagatggacctccctgcaaacattgagaatgttctg
gctcctgagaacgtctctggcaaccccttcaacgcccgactctcattccagctgttccag
ctcttcaagtcgcggcaagaagacgttagcgaggcagatgagcgcaaggtggccatgccc
acagtccgctccgaagacaacagcgacgaccgattccgtcgctcattgcaatcatggact
gcaccaggtgctgcggacgacgtccaagcagctgatccgcttgtggagctcagcgataag
atcacgctcacttatgcatcctcactgcacacaccagagctttggacgactgcaatctgg
gtctacacccatctgtcttttgcaccgatgcgtgagcactacatccgctctctagtcacc
cagttttctggtctcttctccctggaggacagcaatcctacctacacgcacctcacagca
gatctccatgtcccttcaacatggctccatgcagccgccgctctgcacgccaagtcgagc
ggcgatgctcttcgtgaggccactcatctcatcaaggccgatgagtttgaagaggcacac
gaggtgctatgcaggaaggtcggtccagaagccatcatctcccgtgattacgacgccctc
cgtgagctcatggccggcttcgtcgcagagtccaacgtccctcttccacgggagcccgtc
caaggctgggcccaaggcggccaaatctacttcgactacatcgagctcatcgacctaacc
ggcgcacgctcctcataccgcgtcgacgaggaacttgagtcccgcgtcgaagaactcctc
gtcaagctccagcgcgccctcgaaatcgccggccgcgacagactcggtgcttgtggtctc
gaagaacgtgttgccctcatggatatcgccggtactgttgcaaatctcatcactaagaac
cagcgcacaaaccgcaattccatcctcaaactcccacttacagaggatctctggcttaaa
cactcaattgaccttagcacgagttattaccgcaacttgctggttacgagtagataa
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integrated database retrieval system
