KEGG   Bipolaris oryzae: COCMIDRAFT_32502
Entry
COCMIDRAFT_32502  CDS       T03125                                 
Name
(RefSeq) hypothetical protein
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
bor  Bipolaris oryzae
Pathway
bor03022  Basal transcription factors
bor03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bor00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    COCMIDRAFT_32502
  09124 Replication and repair
   03420 Nucleotide excision repair
    COCMIDRAFT_32502
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bor03021]
    COCMIDRAFT_32502
   03400 DNA repair and recombination proteins [BR:bor03400]
    COCMIDRAFT_32502
Transcription machinery [BR:bor03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     COCMIDRAFT_32502
DNA repair and recombination proteins [BR:bor03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     COCMIDRAFT_32502
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 19122123
NCBI-ProteinID: XP_007683288
JGI: Cocmi1_32502
UniProt: W6ZJK6
LinkDB
Position
Unknown
AA seq 377 aa
MNTIDGSDRHIKTEEAPPPSLLAIVLDTNPHAWAHLSSTLSLSTALANILVFINAHLASG
NTNEVAVIASHSHKTTFLYPSPVAPQTQPRNGTANGDVEMNGTGDDKGQHAAESANKYRP
FAVVESTILQNFVKLLNETKESHLEATPTTLIGGALSMALTHINKQTILHAPTAASAESA
SLAALADSENTHVDRVSLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKLAGD
TVLLQQASDATGGVYMKPERPEGLLQYLMMAFLPDVTARASLVVPSAGGVDFRAACFCHR
KVVDIGFVCSVCLSIFCSPDLPGNLCLTCGSYLSLRSAMTNPPALIPRKKKKKKKAGIDS
ATPGTNTPVGSGTPAHP
NT seq 1134 nt   +upstreamnt  +downstreamnt
atgaacaccatcgatggctcagaccgtcatataaagacggaagaagcccctccgccttcg
ctactagccattgtgctcgacacaaatccacatgcctgggcacacttgtcctcgacactt
tcgctttcgactgctctagccaacattctcgtcttcatcaacgcgcacttggcatccgga
aatacgaacgaggtagccgtaatagcatcgcactcgcacaagaccacgtttctctatccg
tcgcctgtagcaccgcagacacaaccacgcaatggcactgcaaatggcgatgtggaaatg
aatgggactggggatgacaaaggccaacatgcggctgagagtgcgaacaagtaccggccg
tttgctgtggtggagagcaccatattgcagaactttgtcaagctgctgaacgagaccaaa
gaaagtcatctggaagcaacgcccacgacactcattggcggcgccctctccatggcgctt
acgcacatcaacaagcagactatcttacatgctcctaccgctgcctcagctgagagcgcc
tctcttgcagcgctggccgactcggagaatacccatgttgaccgcgtgtctctcacgtct
cgcattctcatcgtatccgtgtctggcgatctggccaaccaatacatacccgtcatgaac
tccatctttgctgcacagaggaagcggatacccatagatattctgaagctagctggcgac
acagttttgctacagcaggctagtgatgcaactggcggagtgtacatgaagccagagcgt
ccagagggcttgcttcagtatctgatgatggctttcttgcctgatgtaacggcaagagct
agcttagtagtccccagcgccggcggtgttgatttccgtgctgcatgcttctgtcaccgc
aaagtcgttgatattggctttgtttgcagtgtgtgcttaagcattttctgcagtccggat
ctcccgggtaatctctgcctgacgtgtggttcttatctgtcgctacggagcgcgatgacc
aacccgccagccctgatcccacggaagaagaaaaagaagaagaaggcggggatcgactct
gcgacgccaggcacgaacactccggtaggatcagggacgcctgcgcatccctga

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