Bipolaris oryzae: COCMIDRAFT_32502
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Entry
COCMIDRAFT_32502 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
bor
Bipolaris oryzae
Pathway
bor03022
Basal transcription factors
bor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
COCMIDRAFT_32502
09124 Replication and repair
03420 Nucleotide excision repair
COCMIDRAFT_32502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bor03021
]
COCMIDRAFT_32502
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_32502
Transcription machinery [BR:
bor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
COCMIDRAFT_32502
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
COCMIDRAFT_32502
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
19122123
NCBI-ProteinID:
XP_007683288
JGI:
Cocmi1_32502
UniProt:
W6ZJK6
LinkDB
All DBs
Position
Unknown
AA seq
377 aa
AA seq
DB search
MNTIDGSDRHIKTEEAPPPSLLAIVLDTNPHAWAHLSSTLSLSTALANILVFINAHLASG
NTNEVAVIASHSHKTTFLYPSPVAPQTQPRNGTANGDVEMNGTGDDKGQHAAESANKYRP
FAVVESTILQNFVKLLNETKESHLEATPTTLIGGALSMALTHINKQTILHAPTAASAESA
SLAALADSENTHVDRVSLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKLAGD
TVLLQQASDATGGVYMKPERPEGLLQYLMMAFLPDVTARASLVVPSAGGVDFRAACFCHR
KVVDIGFVCSVCLSIFCSPDLPGNLCLTCGSYLSLRSAMTNPPALIPRKKKKKKKAGIDS
ATPGTNTPVGSGTPAHP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccatcgatggctcagaccgtcatataaagacggaagaagcccctccgccttcg
ctactagccattgtgctcgacacaaatccacatgcctgggcacacttgtcctcgacactt
tcgctttcgactgctctagccaacattctcgtcttcatcaacgcgcacttggcatccgga
aatacgaacgaggtagccgtaatagcatcgcactcgcacaagaccacgtttctctatccg
tcgcctgtagcaccgcagacacaaccacgcaatggcactgcaaatggcgatgtggaaatg
aatgggactggggatgacaaaggccaacatgcggctgagagtgcgaacaagtaccggccg
tttgctgtggtggagagcaccatattgcagaactttgtcaagctgctgaacgagaccaaa
gaaagtcatctggaagcaacgcccacgacactcattggcggcgccctctccatggcgctt
acgcacatcaacaagcagactatcttacatgctcctaccgctgcctcagctgagagcgcc
tctcttgcagcgctggccgactcggagaatacccatgttgaccgcgtgtctctcacgtct
cgcattctcatcgtatccgtgtctggcgatctggccaaccaatacatacccgtcatgaac
tccatctttgctgcacagaggaagcggatacccatagatattctgaagctagctggcgac
acagttttgctacagcaggctagtgatgcaactggcggagtgtacatgaagccagagcgt
ccagagggcttgcttcagtatctgatgatggctttcttgcctgatgtaacggcaagagct
agcttagtagtccccagcgccggcggtgttgatttccgtgctgcatgcttctgtcaccgc
aaagtcgttgatattggctttgtttgcagtgtgtgcttaagcattttctgcagtccggat
ctcccgggtaatctctgcctgacgtgtggttcttatctgtcgctacggagcgcgatgacc
aacccgccagccctgatcccacggaagaagaaaaagaagaagaaggcggggatcgactct
gcgacgccaggcacgaacactccggtaggatcagggacgcctgcgcatccctga
DBGET
integrated database retrieval system