Bipolaris oryzae: COCMIDRAFT_33137
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Entry
COCMIDRAFT_33137 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
bor
Bipolaris oryzae
Pathway
bor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCMIDRAFT_33137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bor03021
]
COCMIDRAFT_33137
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_33137
Transcription machinery [BR:
bor03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
COCMIDRAFT_33137
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
COCMIDRAFT_33137
U7-dependent histone pre-mRNA processing factors
COCMIDRAFT_33137
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
19122251
NCBI-ProteinID:
XP_007683979
JGI:
Cocmi1_33137
UniProt:
W6ZPU0
LinkDB
All DBs
Position
Unknown
AA seq
872 aa
AA seq
DB search
MSAKRKAAAMAPEDDDPIDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHE
GLSAMPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQ
DSVRVGNMSSNSETKIQMYTEADHLNTYPMIESIDFYTTHTVSGVRITPYPAGHVLGAAM
FLMEIAGLKILFTGDYSREDDRHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLM
KAITDVLNRGGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQ
TYVSAMNDNIKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDLGGCVMLASPG
MMQSGTSRELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRPGQ
RENEQTMIPRRCTVQEYSFAAHVDGKENMEFVQEVGAPVVILVHGEKGNMTRLKSKLLSF
NAQKTIPTKIYSPANCEELRIPFKTDKIAKVVGKLASITPPMPRSLTPGGSEADQAGIKQ
ESEGENVDIISGVLIQNDFKISLMAPEDLKEYAGLTTTTILCRQHITLSAAGIDLIRWAL
EGTFGAIKETRLIDAAVEGKMNGTENGHKEEADEEVNRTEIKFTVMDCVGVLVKNGGRVE
VEWEGNVINDGIADAVLAVLFTVESSPAAVRQSSKQHSHNHGPPASDDISATKFTHRFKD
KPHPHRTLDPSTRLARLFLFLEAQFGEESVRPITLPRNSTTTATTNGTPAATTDADTPSP
DAPAPDATSPTDPHGVTESYSADDQLSTEDKQELKRLHNLGIPVPGVEIKFDRFVAKVWL
EDLDVECSNNALRARVKAVVERGVETVSGLWS
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaaagagaaaggcggccgcaatggcgcccgaagacgacgaccccatagatcct
tccgacgagctcatgttcctctgcttgggaggcggtaacgaggtcgggcggtcatgtcac
atcattcagtacaagggcaagacggtcatgctcgatgccggcatgcaccccgcccacgag
ggcttgtccgccatgcccttttacgacgactttgatcttagcactgtagacgtgctcttg
atatcacattttcacgtcgaccatgcagcttctctcccatacgtccttgccaaaacaaac
ttcaagggccgtgtcttcatgacacatcctaccaaagcaatctacaagtggctcatccaa
gattcggtccgtgtcggcaacatgtcgagcaactctgagaccaagatccaaatgtatact
gaggccgatcatctcaacacctaccccatgatcgaatccattgatttctacactacacat
acagtctctggtgtacgaataacaccgtatccagcaggccacgtgcttggtgctgccatg
ttcctcatggagattgctggtttgaagatactcttcactggcgattactcgcgagaagat
gaccgacatttggtatcagcttccgtgccgcctggcgtcaagattgatgttctcattacc
gagtcaacatttggtatctcgatgcacactccgcgtgttgagcgagaggcacagctcatg
aaggctatcactgatgtgctcaaccgcggtggccgagccctgctcccagtttttgccctg
ggacgagcgcaagaacttttgctcatcttggatgagtactggagcaaacacccggaggtt
cagaagatacccatctattacaactcgagtctggcgcgaaagtgtatgcaagtgtaccaa
acatacgtttcggccatgaacgacaacatcaagcgtctcttcgctgagcgcatggcagag
gccgaagcagcaggcgacacaggccgtcgtggagcttgggacttcaaatttgttcgatca
ctcaagagcctggagcgctttgatgacttgggtggctgtgtcatgctggcttcacctggt
atgatgcagtcaggcacatcacgtgagctgcttgagcgatgggcgccagatccgagaaac
ggtgtcatcattacgggttactctgtcgaaggcacaatggcgaagcagattgtacacgaa
cctgatcaaatccccgctataatgacacgagcaagcaacacagcgcgtcgaccaggtcag
cgggagaatgagcagaccatgataccccgacggtgcacagtccaggaatacagttttgct
gctcacgttgacggaaaagagaacatggagtttgtgcaggaagtcggcgcgccagttgtc
attcttgttcatggcgaaaaaggcaacatgacccgcctaaagtccaaactactctctttc
aacgcccaaaaaaccattcctactaaaatctattctccagccaattgtgaggaactccgc
atccccttcaaaaccgataagatcgcaaaagttgtgggaaagttagcttccatcactccg
ccgatgcctcgttctctgacccctggtggtagtgaggctgatcaggctgggatcaagcag
gaatcggagggtgaaaatgtagacatcatcagtggagtgttgatacagaatgatttcaag
attagtctcatggcgccagaggatttgaaagagtatgctggattgacaactacgactatt
ctttgccgtcaacatattacactgtcggcagcgggcattgatttgatacggtgggctctc
gaaggtacttttggtgccatcaaagagactcgtctcatcgatgcagctgttgaaggcaag
atgaacggcactgaaaatgggcacaaggaagaagcagatgaggaagttaaccggacagag
atcaaatttaccgtcatggattgcgtaggcgtgctcgtcaagaacggtgggagagtagaa
gtcgagtgggaaggcaatgtaatcaacgatggaattgctgatgccgtcctcgccgtccta
ttcacagttgagtcctcaccggcggctgtacggcaatcctcaaagcaacactcgcacaac
catggacctccagcttcagacgacatttctgctacaaaattcactcaccgtttcaaggat
aaaccgcaccctcacaggacacttgacccttcgacacgtcttgctcgtcttttcctcttc
cttgaggcacagttcggcgaagaatctgtccgtcccattactcttccccgcaatagtact
acaacagcaaccaccaacggaacgccagccgctactacagacgcggatacaccttctcca
gacgctccagcacctgatgctacatctccaacagatcctcatggtgtcaccgaatcttat
tcagccgatgaccaattgtctacagaggacaagcaggagttgaagcgtttgcacaaccta
ggcatccctgttccaggagttgagatcaagtttgatcgctttgtggccaaggtgtggctg
gaggatttggacgtagaatgttcgaataatgcgctaagagcacgtgtcaaggcagtagtc
gaaagaggtgtagagacggttagtggcttgtggtcgtaa
DBGET
integrated database retrieval system
