Bipolaris oryzae: COCMIDRAFT_34529
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Entry
COCMIDRAFT_34529 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bor03016
]
COCMIDRAFT_34529
Enzymes [BR:
bor01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
COCMIDRAFT_34529
Transfer RNA biogenesis [BR:
bor03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
COCMIDRAFT_34529
Prokaryotic type
COCMIDRAFT_34529
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Taq-exonuc
Motif
Other DBs
NCBI-GeneID:
19122575
NCBI-ProteinID:
XP_007685495
JGI:
Cocmi1_34529
UniProt:
W6Z8A5
LinkDB
All DBs
Position
Unknown
AA seq
624 aa
AA seq
DB search
MSDNEGPRRDHGSSNGDRGDKKRKWADRDRRNAARGGGGRQHGSRPNKKRNMGRKEHNSS
QLDRRDRNAEQQAKYKEQDEKGENERPALPAAFPAEEVEAEERRPKRKVAVMIGYSGTGY
KGMQIDNKQKTIEGDLFNAFVAAGAISKANASDPKKSSLVRCARTDKGVHAAGNVVSLKL
IIEDDDILEKINSHLPDQIRVWGIQRTIGSFSCYQACDSRWYEYLIPTHSFLPPHPSSYL
GKKLEEYAEKENDLEGYRKRQAEVVDFWPEVEEKHIKPILESLDDSIRPLVLEALYNVDA
VDAQPGEDPVIDASIEDQPKEEKSANTEAATETAMPDADETNTSEQPKDEVKQAIDSIQQ
NEPNITLDDSTDGTRPLPEGVVNQPVLEEAIKTLKKAYIDIKKAYRISPERQARVQAALD
KYLGTHKYHNYTVHKKFNDKSAQRYIKSFKVAPKPIIINDTEWLSLKVHGQSFMMHQIRK
MVGMAALTVRCGTDPAIMDKSFGNEVVRIPKAPGLGLLLERPVFDSYNAKLAKQHARDPI
DFNRYNDKIEEFKEREIYQRIFREEAQGNQFNTFFTHLDNYKDPQFLYLTSGGIEATKRK
REDKSVQRKFEEDSEDENASGGEG
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaacgaaggcccccgccgcgaccacggttcgtcgaatggcgaccgaggcgac
aagaaacgcaaatgggcagatcgcgatcgcagaaatgctgcgcggggaggtggtggacgc
cagcacggaagccgtccgaataagaagagaaatatggggcgtaaggagcataattcgtca
caattagatcgacgggatcgcaatgccgaacagcaagccaaatataaagagcaggacgag
aagggcgaaaacgagcgaccagccctacccgcagcttttcctgctgaagaggtcgaggcc
gaggagcgtaggccgaagcgcaaagtcgcagtcatgattggttattcaggcactggctac
aagggcatgcagatcgacaacaagcagaagacaattgaaggcgacctgttcaatgctttc
gttgcagccggcgcaatatccaaggcgaacgcgtccgatcccaagaagtcgtccctcgtg
cgttgcgctcgtacagataagggcgtacacgctgccggcaacgttgtgtccttgaaattg
atcatcgaggatgatgatatcctcgaaaagatcaacagccatttgcccgaccagattagg
gtctggggtatccagcgaaccatcggctccttcagctgctatcaggcgtgcgactcgaga
tggtacgaataccttattccaacgcactcgttcctcccaccacacccttcgagttacctg
ggcaagaaactggaagagtatgcagagaaagagaatgacctagaggggtaccgtaagagg
caagccgaggtcgtagacttttggcccgaagtcgaggagaagcacatcaagcctatcttg
gagtctctagatgactcaatacggccactcgttctggaagcactgtacaacgttgatgca
gtagatgcgcagccaggtgaagaccccgtaatcgatgcctcaatcgaagaccagcccaag
gaagagaaatctgcgaataccgaagcagctacggagactgcaatgccagatgcagacgag
accaataccagtgaacaacccaaagatgaggtcaagcaggccatcgattcgatacagcag
aacgaacccaacatcactcttgatgactccaccgatggcacgcgccctctgcccgaaggc
gtcgtgaaccagcctgtgctcgaagaagccatcaagacgctcaaaaaggcctacatcgac
atcaagaaggcctaccgcatctctcctgagcgacaagcgcgcgtccaggccgcactcgac
aagtatctcggaacccataaataccacaactacaccgtccacaaaaagttcaacgacaaa
tccgctcagcgctacatcaaaagcttcaaagtcgcacccaaacccatcatcatcaacgac
accgaatggctcagcctcaaagtccacggccaaagcttcatgatgcatcagatccgcaaa
atggtcggcatggctgccctaacagtccgctgcggtaccgatcccgccatcatggacaag
agcttcggcaacgaggtcgtacgtattcccaaagcaccgggcttgggtttacttcttgag
cgccctgttttcgactcctacaacgccaaacttgccaagcagcatgctcgcgatcccatt
gatttcaatagatacaatgataagattgaggagtttaaggagagggaaatttatcagagg
atttttagggaggaggcgcaggggaatcaattcaataccttttttacccacttggacaat
tacaaggatccgcagttcctgtacctgacgtctggaggtatcgaggcgaccaagaggaag
cgcgaagataagtctgtgcagcgcaagtttgaagaggattctgaggatgagaatgcaagt
ggtggagagggttga
DBGET
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