KEGG   Bipolaris oryzae: COCMIDRAFT_3506
Entry
COCMIDRAFT_3506   CDS       T03125                                 
Name
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bor  Bipolaris oryzae
Pathway
bor03030  DNA replication
bor03410  Base excision repair
bor03420  Nucleotide excision repair
bor03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    COCMIDRAFT_3506
   03410 Base excision repair
    COCMIDRAFT_3506
   03420 Nucleotide excision repair
    COCMIDRAFT_3506
   03430 Mismatch repair
    COCMIDRAFT_3506
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bor03032]
    COCMIDRAFT_3506
   03400 DNA repair and recombination proteins [BR:bor03400]
    COCMIDRAFT_3506
Enzymes [BR:bor01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     COCMIDRAFT_3506
    6.5.1.6  DNA ligase (ATP or NAD+)
     COCMIDRAFT_3506
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     COCMIDRAFT_3506
DNA replication proteins [BR:bor03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    COCMIDRAFT_3506
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     COCMIDRAFT_3506
DNA repair and recombination proteins [BR:bor03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     COCMIDRAFT_3506
   NER (nucleotide excision repair)
    Other NER factors
     COCMIDRAFT_3506
   MMR (mismatch excision repair)
    Other MMR factors
     COCMIDRAFT_3506
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 19122698
NCBI-ProteinID: XP_007685902
JGI: Cocmi1_3506
UniProt: W6ZJB1
LinkDB
Position
Unknown
AA seq 891 aa
MAPKQATLGKFFGKPNGDAKQQSKLAFSTKPKPSKKDSTPQEEPQSSPKDLKKEQDEEAD
SDAEVRAPVKEQVESDGEAMEIDSVSSETGKKRPIKEKVEEESEEEPPSKRQRRKPWAEK
ETPKKAAAKPKTEKTSPKSKKAAAVSKATEPEDDEEEASTKAKGKQGKKGKKEAEKSSAL
AKEETESSKEQEEDEVVSSEEEPEEVKVKARKQVQTTLASNTKDTYPDWKPGEPVPYAAL
CTTFSKIEMTTKRLEILAHCSLFLRQVLRLTPSDMLPTVMLMVNKLAADYAGIELGIGES
LIMKAISESTGRSLQHIKSDQNEIGDLGLVAAKSRSKQPTMFKPKALTIEGVRKGLMAIA
TVEGQGAQGRKVDGIKKLLSAADAHNSGKNVDIEKDKGGPSEAKFIVRTLEGKLRLGLAE
RTVVVAVAQAMIFHEMSLQGKTPSTEDLGKAEAMLKTVYSELPSYEVIIPAMIEHGIMNL
RENCRLQPGVPLKPMLAKPTKSITEVLDRFEGKDFTCEYKYDGERAQIHFVAHDAKIELA
TEAPSAGKSERGVSNIFSRNSEDLSKKYPDILAKLPTWVKEGTKSFVLDCETVAWDMVEK
KVLPFQQLMTRKRKDVKVEDVKVKVCVFAFDILYLNGEALVTKSFRERREHLKEAFVPVE
GEFAFAKYGNTNELEEIQTLLEDSVKEGCEGLMVKMLDGPESYYEPSKRSQNWLKVKKDY
LAGVGDSLDLVVLGAYYGKGKRTSWYGAFLLACYNPSTEKYETVCNIGTGFSEAILETLH
KTLSEIVIDRPKPFYTHSSGNKDQPDVWFEPRYVWEVKTADLTLSPRYKAAAAEVGGGGK
GVSLRFPRFIKEREDKKPDQASSSRMIAEMYQRQESVAKNKGPSVDDDFEY
NT seq 2676 nt   +upstreamnt  +downstreamnt
atggctcctaagcaggcgacactaggaaagttctttggaaaacccaacggcgatgcaaag
caacaatcgaaactagccttttctacaaagccaaagccaagcaagaaggattcaacaccg
caggaagagccgcaatcttcaccaaaggacctgaagaaggaacaagatgaggaagccgac
tcagatgcagaggtcagagcgccggtgaaggagcaagtagaatcagatggcgaggcaatg
gaaatcgacagcgtaagctctgagactggcaagaagaggccaatcaaagaaaaggtagaa
gaggagtctgaggaagaacctccaagcaaacgccaacggagaaaaccttgggcggagaag
gagacgccgaagaaggcagctgcgaaaccaaagactgaaaagacatcacccaagtcaaag
aaagccgctgctgtatccaaggctacagagccagaagatgatgaagaggaagcgtcgaca
aaggccaagggcaagcagggcaagaaaggcaagaaggaggctgaaaagtcttctgcatta
gcaaaggaggaaacagaatcgagcaaggagcaagaagaggatgaggtggtcagctctgaa
gaggagcctgaagaggtcaaggtcaaggcacgaaagcaagtacagacaacccttgcgtcc
aacaccaaggacacatatcccgactggaaaccaggcgagccagttccatatgctgcgcta
tgcacaacattttcgaagattgagatgacgacgaagcgcctagagattcttgcacactgc
tccttgttcttgagacaggtgttgcggctgactccatctgatatgctgccaactgtcatg
ctcatggtcaacaagcttgcagccgattatgcaggcattgagctcggcattggcgaatct
ctaatcatgaaggcaatttccgagagtactgggcggagtttacaacacatcaagagcgac
cagaacgaaatcggagaccttggccttgttgcagccaagagtcgatcaaaacaacctacc
atgtttaaacctaaggcattgacaatcgagggtgtacgcaagggacttatggccatcgct
accgtcgaagggcaaggtgctcaggggcgcaaggtcgatggaatcaagaaattgctatcc
gccgcagatgcacacaactctggcaagaacgttgatattgagaaggacaagggtggaccc
agtgaagccaaattcatcgtccgaaccctcgagggtaaacttcgactgggccttgctgag
aggactgttgttgtagctgtcgcccaggcaatgatcttccacgagatgtcgcttcagggc
aagacgccatcgaccgaggatttgggcaaagcagaagctatgctaaagacggtttacagc
gagctgccaagttacgaagtcatcatcccagcgatgattgagcacggcatcatgaatctg
cgcgagaactgtcgcctacagcctggtgtacctctgaagcctatgcttgccaagccaaca
aagtccatcacggaggtcttggatcgctttgaaggcaaggactttacttgcgagtacaag
tatgacggagagcgcgcacagattcactttgtcgctcacgatgcaaagatagagctagct
actgaagcacccagcgctggcaagagcgagcgtggcgtgtctaacattttctcgcgcaac
tctgaggatctatccaagaagtatcctgatattctcgccaaactgccgacttgggttaaa
gaaggcacaaagagcttcgttcttgactgtgagactgttgcttgggatatggtagagaag
aaggtactgccttttcaacagctcatgacgaggaagagaaaggatgtcaaggtcgaagat
gtcaaggtcaaggtttgcgtttttgcctttgatatcctctatctcaatggcgaggcactg
gtaacgaaatcattccgtgagcgtcgcgagcatctcaaagaagccttcgtaccggtcgaa
ggcgagtttgcatttgccaagtatggcaataccaacgaactggaggagattcagacgctc
cttgaagactcagtaaaggaaggctgtgaaggtctcatggtcaagatgttggacgggccg
gaatcttactacgagccatccaagcgctcgcagaattggctcaaggtcaagaaggactat
cttgccggtgtcggcgattccctggatcttgtggtgttgggagcctactacggcaagggc
aagcgtaccagctggtatggtgcctttttgctcgcgtgctacaacccttcgacggaaaag
tacgaaacagtgtgcaacattggcactggtttctccgaggccatcctggaaaccctgcac
aagacgctttccgagattgtcattgaccgcccgaagccattctacacacattcgagtggt
aacaaagaccagcctgatgtgtggttcgagccgcgctatgtctgggaggtcaagactgca
gatcttaccttgtcgccgcggtacaaggcagccgcagctgaagtcggtggcggtggcaag
ggtgtcagtttacgtttcccacgtttcattaaggagagggaggacaagaagccggatcag
gcgagttcaagtcgtatgattgcggaaatgtaccaaagacaggaaagtgtggccaagaac
aaggggcctagcgttgatgatgacttcgagtattga

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