Bipolaris oryzae: COCMIDRAFT_37248
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Entry
COCMIDRAFT_37248 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bor
Bipolaris oryzae
Pathway
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_37248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_37248
03009 Ribosome biogenesis [BR:
bor03009
]
COCMIDRAFT_37248
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCMIDRAFT_37248
Spliceosome [BR:
bor03041
]
Complex A
U1 snRNP components
U1 related factors
COCMIDRAFT_37248
Complex B
COCMIDRAFT_37248
Ribosome biogenesis [BR:
bor03009
]
Eukaryotic type
Pre-60S particles
Helicases
COCMIDRAFT_37248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Phos_pyr_kin
DEAD
TENA_THI-4
Helicase_C
PfkB
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
19123207
NCBI-ProteinID:
XP_007688487
JGI:
Cocmi1_37248
UniProt:
W6Z5H0
LinkDB
All DBs
Position
Unknown
AA seq
1071 aa
AA seq
DB search
MSPKRILVIAGSDSSGGAGLEADQKVIAAHGCYAMTATTALTAQNTLGVQDIHHTPPDFV
KRQIDAVCDDIGADVVKTGMLASAETIKIVANALKRHNISTSVVDPVTVSTSGSQLLPEA
AVTTLIEHLFPYTTLLTPNLPEAKLLLKAAGVEVPDPQNVDDIVAMARHIHERGPKWVLL
KGGHLPLTRGHFVSKEEADREVVLNVLVGDSGVTLIESDYLQSKNTHGTGCSLASAIACN
LALGMPMTKAVKEANRYIEAGIKTATDIGRGNGPINHFHSIYILPFTPGNFISYLLDREE
VQRPWKEYTEHEFVQRMGDGTLPLENFMYYLVQDYQFLVQFARATALAAYKSSNLQDIGR
SVQQIVTLQEEIQLHIDFCRMYGLSEADIISEEEDQATTAYTRYVLDIGMSQDFLALQIA
LLPCLIGYGIIAKRLYEDPKTVRFGSRYWQWIEQYVADEYRGAMMRGSELVEKHAAGLSP
SRVEELAKVFVHATKAHLETRSLRPKGASLTPVSTSHTHIMSYGGGYGGGGRDGGRGYSN
GYDYSNAGYGSYSNSTSQYASYGFLSGGYGGGSNGYSGGGGGYGGGGYGGGGYGGRDGGD
RMSQLGQGLKQQQWDLDALPKFEKSFYKEDPAVTARSEAEVAEYRKEHQMTVKGTNIPKP
VTTFDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPA
IVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIR
DLARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPD
RQTCMWSATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEHLETIMSDKENKIL
IFTGTKRVADEITRFLRQDGWPALSIHGDKAQNERDWVLNEFKTGKSPIMVATDVASRGI
DVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENSKQARDLVQILTESKQ
QIDPRLHEMARYGGGGGGGRWGGGRGRGGGRGGGRGGWTGGNGDPVRNSRW
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccaaaacgtatcctggtaattgctggctcagatagttcaggtggggccggacta
gaggctgatcagaaggtcattgcagcacacggctgctatgcaatgactgctactaccgcg
ttgactgcacagaatacgctaggtgtgcaggacatacatcatacacccccggactttgtg
aagaggcagattgatgctgtttgtgatgatattggggcagatgttgtcaagactggcatg
cttgcgtcagcagagacgatcaaaattgtcgccaacgcgttgaagagacacaatatcagc
acgagtgttgttgatcctgtaacggtctcgacatcaggttcacaacttcttcccgaagct
gcggttacaacactaatcgaacatcttttcccttacacaacgcttctaacaccaaacctc
ccagaggcaaaacttcttttgaaagctgcaggcgttgaagtgccggacccgcagaacgtt
gatgacattgttgcgatggcacggcatatccatgagagaggacccaaatgggtgttactt
aagggaggccacctaccattaacacgcggtcactttgtcagtaaagaggaagcggaccgg
gaagtagtgctaaacgtgctggttggagatagtggagtcaccttgatagagagtgattac
ttacaatcgaagaacacccatggcacagggtgttcacttgcttcagcgatcgcgtgcaac
cttgctctcggtatgcctatgaccaaggctgtgaaggaagcgaatcgatacattgaagcc
ggaatcaaaacagcgacggatatcgggcgggggaatgggccgatcaatcatttccattca
atatacattctcccttttacacccggtaacttcatctcgtaccttcttgatcgagaagaa
gtgcagaggccgtggaaagagtatacggagcatgagtttgtacagaggatgggagacgga
acgctaccactcgaaaacttcatgtactatcttgtgcaagattaccagttcctcgtgcaa
tttgcaagagctaccgctctcgccgcatacaaatccagcaacctccaagatatcggtcgc
tccgtccaacagattgtcacccttcaagaggaaattcagcttcacattgatttctgcaga
atgtatggactctctgaagccgatatcatcagcgaggaagaggaccaggctaccacggca
tacacgcgctacgtccttgacattggcatgtcgcaagacttccttgccttgcagatagcc
cttctcccttgtctgataggctacggcattattgctaagcggctatatgaggacccaaaa
acagtcaggtttggcagtagatactggcagtggattgagcagtatgtagcggatgagtac
aggggtgcaatgatgaggggaagcgagcttgtggagaaacatgcagcaggcctaagtcca
agcagagtggaggaactagctaaggtgtttgtccatgcgactaaagcccatctcgaaaca
cgctctcttagaccgaaaggcgcttctttgacgccagtctctacctcacacacgcacatc
atgtcttacggcggtggatatggcggcggcggtcgcgatggcggccgtggctattcaaac
gggtacgactacagcaacgctggatacgggtcttatagcaactcgacaagccaatatgca
tcgtacggttttcttagtggcggatatggcggcggctccaacggctactctggcggcggt
ggtggttacggcggcggtggctatggtggtggcggctacggtggtcgcgatggaggtgac
cgcatgtcgcagctgggccaaggcttgaaacagcagcaatgggatctcgatgctcttccc
aaattcgaaaagtccttctacaaggaggatcccgcagtcaccgcgcgctccgaggctgag
gttgccgaataccgcaaggagcaccagatgactgtcaagggcacaaacatccccaagcca
gtcacaactttcgatgaggcgggtttcccatcctacgttatgaacgaggtcaaggctcag
ggcttcgcaaagcctactgctatccaagcgcagggttggcccatggctctctctggtcgc
gatgtcgttggtgttgctgaaactggttccggaaagacgctcacctactgtcttcccgcc
atcgtccacatcaacgctcagcctctcctcgctcctggtgatggtcccatcgttctcatc
ctcgctcccactcgtgaacttgctgtccagattcagcaagagatcagcaagttcggaaaa
tcttcgcgcattcgaaacacctgtgtctacggaggtgttcccaagggtcctcaaatccgt
gaccttgcccgcggtgttgaagtgtgcattgccactcccggacgtcttattgatatgctc
gaagcaggaaaaacgaacctccgccgcgtcacctacctcgttctagacgaggccgaccgc
atgcttgacatgggttttgagcctcagattcgcaagatcattggccagattcgtcccgat
cgtcagacttgcatgtggtcggctacatggcccaaggaagtccgccaactggctgctgac
taccagaaggactggatccaggtcaacattggttccatggacctctctgctaaccaccgt
atccaacagattgtcgagcatctcgagaccatcatgagcgacaaggagaacaagatcctc
atcttcacaggtaccaagcgtgttgcggacgaaatcacccgattccttcgtcaggatggc
tggccggcgctttccatccacggtgacaaggcgcaaaacgagcgtgactgggtccttaac
gagttcaagacgggcaagagcccaatcatggttgctactgacgtagcttcccgtggtatc
gatgttcgcaacattactcacgtgttcaactatgactacccgaacaactcggaggactat
gtccaccgtattggtcgtactggtcgtgctggcgctaacggaactgccattacccttttc
actacagagaactccaagcaagctcgtgacctcgtccaaattctcacagagtccaagcag
cagattgacccccgtcttcatgagatggcccgctacggcggtggcggcggcggtggtcgc
tggggaggtggccgtggccgtggaggaggccgcggcggaggccgtggtggctggactgga
ggtaacggtgatcccgtccgcaacagccgctggtaa
DBGET
integrated database retrieval system
