Bipolaris oryzae: COCMIDRAFT_39056
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Entry
COCMIDRAFT_39056 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bor03016
]
COCMIDRAFT_39056
Enzymes [BR:
bor01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
COCMIDRAFT_39056
Transfer RNA biogenesis [BR:
bor03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
COCMIDRAFT_39056
Prokaryotic type
COCMIDRAFT_39056
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DUF5543
Motif
Other DBs
NCBI-GeneID:
19123606
NCBI-ProteinID:
XP_007690531
JGI:
Cocmi1_39056
UniProt:
W6Z5W4
LinkDB
All DBs
Position
Unknown
AA seq
371 aa
AA seq
DB search
MDSEGEKILEGIFAVAKPTNVSSADVLLKLQETFAPSATFAPLLRTQPKRTSKSSDQVFR
LGHGGTLDPLAAGVLIVGIGRGTKQLSNYLSCSKTYETVVLFGASTDTYDCTGSITQEAG
YSHVTKELVDEKLGAFRGTIQQLPPLYSALKINGIKACEYARQGKDLPRELESREMHVDE
CTLLEWYEPGQHDFAWPGKVEPASAPAAKIRLTVCSGFYVRSFAHDLGRACDTYSHMASL
LRTRQADFTTSNPPELSSLTSTLTYADLEAGEHVWGPKLRPQLDRWVTAHPVVQGHVNGR
DASVKRKTEEQQARPRQRFRGEWVASTKKERIKQQGGKFKGKWGRKLAADGEANNITSNQ
SMVPVINDQKP
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggacagcgagggtgagaaaattctggagggtatcttcgctgttgccaagccaacaaac
gtctcgtctgcagatgttctcctcaaattgcaggaaacttttgcgccatcagccacattt
gcgccactgctcaggacgcaacccaagcgtaccagcaaatcgtctgatcaggtgtttcgt
ctcggacacggcgggactctggatcccttggctgctggagttcttattgtgggcatcggc
cgtggcactaaacaactctctaattatctatcttgcagcaagacttatgagacagttgtg
cttttcggcgcaagcacggatacttacgactgtactggctccataacccaggaagcggga
tactcgcacgtgacaaaagagttggttgatgaaaagcttggggctttcagaggaacgata
cagcaactgccccctctgtactcggcgttgaagatcaatggtatcaaggcttgcgagtac
gcgcgtcaggggaaggacctgccgcgagagctagagagccgagaaatgcatgttgacgag
tgtacgctgttggagtggtacgagccgggacagcatgactttgcatggccaggcaaggtc
gagcccgcttcagcacctgctgcgaaaatacgactgacggtatgctcggggttttatgtt
cgcagctttgcacacgatcttggcagggcgtgtgacacgtactcgcacatggcatctttg
cttcgaacacggcaagcagatttcaccacatcgaacccacctgagctgtcaagtttgaca
agcacgctaacatatgcggatctggaagctggtgaacacgtctgggggccgaagcttaga
ccacaacttgatcgttgggttactgctcatccggtcgtccaagggcatgtcaatgggagg
gatgcaagtgtgaagcgcaagaccgaagagcagcaagcaagaccgaggcaacggttccgt
ggagagtgggtggcaagcacaaagaaagagaggattaaacagcaaggaggcaagttcaag
ggtaaatggggaagaaaacttgcggccgacggggaggcaaataacatcaccagtaaccag
tcgatggtacctgtgatcaacgatcaaaaaccatga
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