KEGG   Bipolaris oryzae: COCMIDRAFT_39744
Entry
COCMIDRAFT_39744  CDS       T03125                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
bor  Bipolaris oryzae
Pathway
bor03018  RNA degradation
bor03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bor00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCMIDRAFT_39744
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCMIDRAFT_39744
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bor03019]
    COCMIDRAFT_39744
   03041 Spliceosome [BR:bor03041]
    COCMIDRAFT_39744
Messenger RNA biogenesis [BR:bor03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCMIDRAFT_39744
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     COCMIDRAFT_39744
Spliceosome [BR:bor03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    COCMIDRAFT_39744
SSDB
Motif
Pfam: LSM SM-ATX DUF4023 TrAA12 RAM
Other DBs
NCBI-GeneID: 19123743
NCBI-ProteinID: XP_007691321
JGI: Cocmi1_39744
UniProt: W6YX91
LinkDB
Position
Unknown
AA seq 140 aa
MLPLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIY
VRGSTIKYLRVPDEIVDIVKEQQAKDQANRGGRGGGMHGRGDHRGDRGGGGRGTRGRGRG
RGRGGGGGGGGGGGGGGGGA
NT seq 423 nt   +upstreamnt  +downstreamnt
atgcttcccttgggccttcttacggccgcgaccggccacccaatgctcgttgagctcaag
agcggcgagacactcaatgggctcctggtcaactgcgacacttggatgaaccttaccctg
cgagaggtcgtacaaacaagcgcagatggcgacaagtttatgaggctgccagagatctat
gttcgcggcagcacaataaaatacctacgagtacccgacgagattgtcgacattgtaaag
gaacaacaggccaaggaccaagcgaaccggggcggacgaggaggcggtatgcatgggcga
ggagaccaccgcggcgatcgtggcgggggaggtaggggaacgaggggtagaggacgtggt
cgtggcagaggtggtggtggaggaggaggtggtggcggcggcggtggtggtgggggtgct
tga

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