Bipolaris oryzae: COCMIDRAFT_39744
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Entry
COCMIDRAFT_39744 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_39744
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_39744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_39744
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_39744
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCMIDRAFT_39744
mRNA degradation factors
5'-3' decay
Lsm complex
COCMIDRAFT_39744
Spliceosome [BR:
bor03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
COCMIDRAFT_39744
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF4023
TrAA12
RAM
Motif
Other DBs
NCBI-GeneID:
19123743
NCBI-ProteinID:
XP_007691321
JGI:
Cocmi1_39744
UniProt:
W6YX91
LinkDB
All DBs
Position
Unknown
AA seq
140 aa
AA seq
DB search
MLPLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIY
VRGSTIKYLRVPDEIVDIVKEQQAKDQANRGGRGGGMHGRGDHRGDRGGGGRGTRGRGRG
RGRGGGGGGGGGGGGGGGGA
NT seq
423 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttgggccttcttacggccgcgaccggccacccaatgctcgttgagctcaag
agcggcgagacactcaatgggctcctggtcaactgcgacacttggatgaaccttaccctg
cgagaggtcgtacaaacaagcgcagatggcgacaagtttatgaggctgccagagatctat
gttcgcggcagcacaataaaatacctacgagtacccgacgagattgtcgacattgtaaag
gaacaacaggccaaggaccaagcgaaccggggcggacgaggaggcggtatgcatgggcga
ggagaccaccgcggcgatcgtggcgggggaggtaggggaacgaggggtagaggacgtggt
cgtggcagaggtggtggtggaggaggaggtggtggcggcggcggtggtggtgggggtgct
tga
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integrated database retrieval system