Bipolaris oryzae: COCMIDRAFT_4374
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Entry
COCMIDRAFT_4374 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bor
Bipolaris oryzae
Pathway
bor03013
Nucleocytoplasmic transport
bor03015
mRNA surveillance pathway
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_4374
09122 Translation
03013 Nucleocytoplasmic transport
COCMIDRAFT_4374
03015 mRNA surveillance pathway
COCMIDRAFT_4374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_4374
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_4374
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCMIDRAFT_4374
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
COCMIDRAFT_4374
Spliceosome [BR:
bor03041
]
Complex C
Other components
EJC/TREX
COCMIDRAFT_4374
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
COCMIDRAFT_4374
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF4844
Motif
Other DBs
NCBI-GeneID:
19124217
NCBI-ProteinID:
XP_007686876
JGI:
Cocmi1_4374
UniProt:
W6Z9Z3
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MSHEEDLIDYSDEEIQPTEAPANGGAAAAKSGLAAGDAAGDKKGSYVGIHSTGFRDFLLK
DELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMEEKPEP
GVATILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVQKDIELLSNKDTHPHII
VGTPGRINALVRDKHLRLANLKHFVLDECDKMLDQPDMRNDVQSIFRATPQHKQVMMFSA
TLNKDVRVVCKKFMQNPLEIYVDDEKKLTLHGLQQYYVKLDEKEKNRKLNDLLDNLEFNQ
VIIFVRSTLRCSELDKLLRECNFPSTAVHSGISQEERIKRYKEFKEFQTRICVSTDIFGR
GIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSPEDEAVLKSIEERFQV
ELPEFPEDGVNSATYMDN
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaggatctcattgactactccgacgaggagatccagcccaccgaggcg
cccgctaacggcggtgcggctgcggccaagagcggtctcgccgctggtgatgctgctggc
gacaagaagggcagctatgtcggcatccattctaccggtttccgcgacttcctgctcaag
gacgagctcgtacgagcaatcaccgactgtggcttcgaacatccttccgaggtccagcaa
gttaccatcccccaggcaatcctcggaaacgatgtcctttgtcaggccaagtcgggtctc
ggaaagactgccgtcttcgttctcgcaaccctccagcagatggaagagaagcccgagcct
ggcgttgctaccattctagtcatgtgccacactcgtgagttggcctaccagatccgcaac
gagtacaaccgtttcgccaagttcttgcccgacgtcaaggtcggtgtcttctatggtgga
acacctgtacagaaggacattgagctcctcagcaacaaggacacccacccccacattatt
gtcggaacacccggtcgcatcaacgcccttgttcgcgacaagcacctccgtcttgccaac
ctgaagcactttgttcttgacgagtgcgacaagatgcttgaccagcctgacatgcgcaac
gatgtccagtctatcttccgcgccactccccagcacaagcaggtcatgatgttttcagct
acgctaaacaaggacgtgcgtgttgtttgcaagaagttcatgcagaacccgcttgagatc
tacgtcgacgacgagaagaagttgacgctgcacggtcttcagcaatactacgtgaagctt
gatgagaaggaaaagaaccgcaagctgaacgaccttcttgacaacctggagttcaaccag
gttattatctttgttcgttctactctgcgctgctctgagcttgacaagcttctccgcgag
tgcaacttccccagcactgctgtgcactctggcattagccaagaagagcgtatcaagcgc
tacaaggagttcaaggagttccagacacgtatctgtgtgtcgacggatatcttcggacgt
ggtatcgatgttgagcgcatcaacgtagcaatcaactacgacatgcccgacaaggctgat
gcgtacctgcaccgtgtcggtcgcgcgggacgtttcggaaccaagggtctgagtatctca
tttgtgagcagccccgaggacgaggcggttctcaagtcgattgaggagcgattccaggtc
gaactccctgagttccctgaggatggagtcaactctgccacttatatggacaactaa
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