Bipolaris oryzae: COCMIDRAFT_6252
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Entry
COCMIDRAFT_6252 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
bor
Bipolaris oryzae
Pathway
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_6252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_6252
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCMIDRAFT_6252
Spliceosome [BR:
bor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
COCMIDRAFT_6252
Complex C
U5 SnRNP specific factors
COCMIDRAFT_6252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
BRR2_plug
Helicase_C
Motif
Other DBs
NCBI-GeneID:
19124896
NCBI-ProteinID:
XP_007689019
JGI:
Cocmi1_6252
UniProt:
W6YYM8
LinkDB
All DBs
Position
Unknown
AA seq
2213 aa
AA seq
DB search
MSKDQNNLAQFKYAAMSNLVLQADRRFTSRRPDEHTGDPESLAGRINIRDMGARTARDSA
SAQTKKLKGPGVERGNLGEGGDVLEREQRKRKRDDGTSAFGAIATADLNIEGLTYKPRTP
ATRQTFELITTIVSRALGDVDPATTRSAADQVLEYLKDDSMKDFDKKKEVDDLLGTSMGA
KEFNELVNLGKKITDYDAQDDEEGGDEEMADGDGADNGDNQGVAVVFDDEEEDEDGPQTF
EIRDADSSDEEDEAEAPIEQIGGDDAKDAGFADTEETIIQGDAATSDRKNGADQLIPAHE
IDAYWLQRQIGQIYEDAHIQQEKTQEALKFLAGVSEDGEEKELREIENDLMDLFDYEHHE
LVAKLVLNRDRVVWVTRWRRAAEDNDERTAVEREMKAAGQQQILQELRARETGIKAEEGA
GTGKMKFNLKDISLPEASNDVEMADAKPEGIVGGLQPSSRLVNLDNIVFDQGNHLMTNAS
VKLPQGSTRRQFKGYEEIHVPAPKAKRDPNEPPLMPTSELPDWARPGFGNSKSLNRIQTK
CFPTAFNDDGNMLICAPTGSGKTNVAMLTMLREIGKHRNPTTGEIALDDFKIIYIAPLKA
LVAEQVGNFGKRLEPYGIKVSELTGDRQLTKQQIAETQIIVTTPEKYDVITRKATDTSYI
NLVRLICIDEIHLLHDDRGPVIESIVSRTLRRSEQTGDHVRIVGLSATLPNYRDVASFLR
VDPDKGLFHFDGTFRPCPLKQEFIGVTDKKAIKQLKTMNDVCYTKVLEQVGEHRNQMLIF
VHSRKETAKTAKYIRDKALEEETIGKILRSDAASREILREESESIQNADLKDVMPYGFGI
HHAGMSRADRTSVEDLFADGSIQVLVCTATLAWGVNLPAHTVIIKGTQIYSPEKGSWVEL
SPQDVLQMLGRAGRPQYDTYGEGIIITTQSEIQYYLSLLNQQLPIESQLISKLADNLNAE
IVLGNVRSRDEAVDWLGYTYLFVRMLRSPALYRVGPEYENDTVLEQRRVDLIHAAAHVLE
KCSLIKYDRKTGALNPTELGRIASHYYITHNSMATYNMHVQPGISAIELFRVFALSEEFK
YIPVRQDEKLELAKLLGKVPIPVKEGVEEPQAKINVLLQAYISRLKLEGLALMADLVYVT
QSAGRILRAIFEICLKKGWSQVAKLALDMCKMAEKRMWPTMTPLRQFPTCPRDIVQKAER
IDVSWSSYFGLDPPSMGELLGMPKAGRLVCGLVEKFPRLQIEATPRPVTRSLLRLELTIR
PDFVWDNELHGTSEAFWILVEDCDGEQVLFHDTFILRRDYADGDVNEHLLEITVPIDEPM
PPNYFVTVLSDRWMASETKLAVSFQKLILPAKFPAHTPVLDLQPLPVSALKRKEYMGLYE
NIGRFNKVQTQTFNTLYTTDDNALIGASAGIGKTICAEFAILRHWGSGDEGRIVYLAPFQ
ELVDNQYKNWNERLSGLSGGKDVVKLTGETTADLRLLEKGDLILATPSQWDSLSRQWQRR
KNVQSVSLLIADELHMLGGSNGHVYEIVVSRMQAMATQLESKLRIVGLSVSLSNARDIGE
WIGANKHTIYNFSPAIRAVPLELKIQSFTIPHFPSLMMAMARPTYSAITQMSPDKPAMVF
VANRKQARNSAADLFNACIADDDEDRFLNVDLSEIQPILEKINEQALATSLSHGIGYFHE
ALNSFDKRAVQHLFKVGAIQVMIVSRDSCWEIDSSAHLVVVQGTQFYEGREHRYVDYPIS
DILQMFGKAGRVGLDKSAKGVLMLPAVKREYYKKFLNEALPIESYLHDYLHDAFVAEISA
KTIESTQEAVDWSTYTYFYRRLLANPSYYNLHDTSHEGLSAHLSDMVEQTLKELTDANLI
EHDEDEDAITPLNPCMIAAYYNISFITMQTLMMSLNGRTSLKGVLEIITAATEFEDIQIR
RHEDHILQRIYDRVPFKMQEPNFETPHFKAFVLLQAHFSRMQLPIDLAKDQETVLRKVLT
ILSASVDVLSSEAHLNAMSAMELSQMVVQAMWQKDSPLKQIPHFDADTIKAAQKFGINDV
DDFINAMDEDENPDYKQLISALNVDQRQLADIANFTNNFYPNVELEHQLVDPENIASNTP
AQLKVRVTRNLEEDEEPKTEVHAPFYPADKTESWWLVLGDQKERTLLAIKKVPILRKLET
VLEFTLEKPGSHELTLYLVSDSYLGVDQAPTFQVEAAEGMEEDSEEEEEEDEE
NT seq
6642 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagatcaaaacaacctcgcgcagttcaaatatgcggccatgtcgaatttggtc
ctgcaggccgacagacgatttacgtcgcgccgaccggacgagcacactggtgaccccgag
tcgctcgcaggccgcatcaacatccgcgacatgggcgcgcgtactgcgcgtgacagtgca
agtgcgcaaactaagaagctcaaggggcccggtgtcgagcgaggcaatcttggggaaggt
ggcgatgtcctggaaagagagcaacgcaagaggaaacgggatgatggcacaagcgccttt
ggggctattgctaccgccgacctgaatattgaaggccttacatacaagccgcggacacct
gctactcgccagacttttgaacttattacaaccattgtgagcagagctctcggcgatgtc
gaccctgcgaccacgcgaagtgcggccgatcaagttctggaataccttaaggatgattcg
atgaaggactttgacaagaagaaggaggtggatgatctcttgggtacttctatgggtgca
aaggagttcaacgagctggtgaacctcggcaaaaagattacggattacgacgcgcaagac
gacgaggaaggaggcgatgaggagatggcggatggagatggcgcagataatggcgataat
cagggtgtagctgtcgtcttcgatgatgaagaggaggacgaggacggccctcagactttt
gaaattcgtgatgccgacagttcagatgaagaggatgaggcagaggcgccgatagaacaa
atcggaggcgacgatgcaaaggacgcaggttttgcggatacggaggagacgataatacaa
ggcgatgcggccacttcggatcgcaaaaacggcgcagaccagctcattcccgcacacgag
atcgacgcatactggttacaacggcagattggacagatttacgaggatgcgcatatacag
caagagaagacgcaggaagcactcaagttccttgcgggagtctcggaagacggtgaagag
aaggagctgcgtgagattgaaaacgacctcatggatctctttgattatgaacatcacgag
ttggtcgccaagcttgttctcaaccgtgacagggtcgtttgggttacaaggtggcgacgc
gctgcggaagacaatgacgagcgaacggctgttgagcgggagatgaaggctgccggccag
caacaaatcctgcaagagttgcgcgcacgagaaacgggcatcaaggcagaagagggtgct
ggcacaggaaagatgaagttcaacctcaaagatatcagtcttcctgaggcgtcaaacgac
gtcgaaatggccgacgccaaaccagagggcattgttggcggcctacagccatcaagtcga
cttgtcaacttggacaacatcgtgtttgatcaaggtaaccatctcatgacgaatgcgagc
gttaagttgcctcaaggatcaacaagacgtcagttcaagggatatgaagagattcacgtc
cctgcaccaaaggcgaagcgcgatccgaacgaacctccacttatgccaacctccgaactc
ccagactgggcgcgccctggtttcggcaactcgaagtcacttaaccgtatccagacaaag
tgtttcccgaccgccttcaatgacgatggcaacatgctgatttgcgctcccactggttcc
ggaaagaccaacgttgccatgttgaccatgttgcgagagattggcaaacaccgtaacccc
acgacaggagaaatcgcccttgacgatttcaagatcatctacattgctccgctcaaggct
ttggttgcggaacaggtcggtaactttggcaagcgtctcgagccgtatggtatcaaggtg
tctgagcttactggtgaccgtcaacttaccaagcagcaaatcgcagagacccagatcatt
gtcaccactcctgagaagtacgatgtcattacccgtaaggccaccgacacaagctacatt
aatctcgtccgcctcatctgtattgatgaaatccatcttcttcacgatgatcgtggtcca
gtcattgagagcattgtcagcagaacccttcgacgtagcgagcagactggtgatcacgta
cgcattgtaggtttgagtgctactcttcccaactaccgcgatgttgcaagtttccttcgt
gtagaccccgacaagggactgttccatttcgacggtactttcaggccgtgtcccctgaag
caagagttcatcggtgttacagacaagaaggctatcaagcagctgaagaccatgaacgat
gtctgctacactaaagttctcgaacaagttggcgagcaccgcaaccagatgcttatcttt
gtacactcgcgaaaggaaactgcaaagactgccaagtacattcgtgacaaggctcttgaa
gaggagactataggcaagattctccgatcagacgctgccagtcgtgaaattctgagggag
gagtccgagtcgatacagaatgccgatctcaaggacgtcatgccctacggatttggtatc
catcacgctggaatgtcgcgagcggaccgtacctctgtagaagatctctttgctgatggt
tcaatccaagtcttggtgtgtacagcaaccttggcttggggtgtcaacttgccagcgcat
acagtcatcatcaagggaacacagatctactctcccgagaagggtagctgggttgaactt
agtccacaagacgttctgcaaatgcttggtcgtgctggtaggcctcaatacgacacgtat
ggagagggtattatcatcactacgcagtctgagattcagtactacctatcactgctcaac
cagcagttgcctatcgagtcacaactcatcagtaagctcgcagacaacctcaatgccgag
attgtcttaggcaatgtccggagcagagacgaagctgtggactggcttggctacacatac
ctgtttgttcgaatgcttcggtcgccagctttgtaccgggtaggccccgagtacgagaat
gatacggttttggagcaaagacgagtggatctaattcacgccgctgctcatgtccttgaa
aagtgcagtcttatcaagtacgacaggaagaccggagccctcaaccctaccgaactcgga
agaattgcctctcactactacatcacacacaactccatggcgacttacaacatgcacgtt
cagcctggtatcagcgccattgagcttttccgagtgtttgcgcttagcgaggagttcaag
tacatccctgttcgtcaagacgagaagttggagcttgctaagctacttggaaaagttccc
attcctgtcaaggagggtgtggaagagcctcaagccaagattaatgttcttctccaggct
tacatctctcgtctcaagctcgagggtttggcactcatggcagatttggtctacgttaca
cagtcagctggacgtattcttcgcgcaatctttgagatttgtctaaagaagggctggtcg
caagttgccaagttggctcttgacatgtgcaagatggctgagaagcgcatgtggcctacc
atgactcctctgcgacagtttcccacttgccccagggatattgtgcagaaagcagagcgt
attgatgtcagctggtcgagctactttggcctggacccacctagcatgggcgagttgctt
ggtatgcccaaggcaggcaggctcgtctgcggtctggttgagaagtttccccgactccag
atcgaggcaacaccacgcccggtgaccagatcgctgcttcgtctggagctcaccattcga
ccagactttgtttgggataatgagcttcacggaacgtctgaagccttctggattctggtt
gaagattgcgatggtgaacaagttctgttccacgacaccttcatcctccgtcgtgactat
gctgacggcgacgtcaatgagcatctgctcgagatcacagtacccattgacgagccaatg
ccgccaaactacttcgtcacagtcctttctgatcgatggatggcttccgagaccaagctc
gctgtctcgttccagaaacttatcctgccggcaaaattccctgctcatacgcctgtcctg
gacttgcagccattgcctgtctctgctctgaagaggaaggaatacatgggcttgtatgag
aacatcggtcgcttcaacaaggtccagacacaaactttcaacaccctctacactacagac
gacaatgcgctcattggtgcttcggctggtattggaaagactatctgtgctgaattcgcc
attttgcgacactggggctctggtgacgaaggccgcatagtttacctagcgccgttccag
gaacttgttgacaatcaatacaagaactggaatgagcggttgtcaggtctctctggaggc
aaggacgttgtcaagcttactggcgaaactacagcagacttgcgactccttgagaagggt
gacctcattttggctacaccttctcagtgggattccctctcccgtcaatggcagcgccga
aagaacgtgcaatctgtgtcgctgttgatcgctgatgaattgcacatgcttggcggttcc
aatggtcatgtgtatgagattgtcgtctctcgtatgcaagctatggcgactcaactcgag
tcgaagttgcgtatcgttggactgagcgtctctttgtcgaatgcacgagacattggtgag
tggataggcgcaaacaagcacaccatctacaacttcagtcccgctattcgagctgtaccg
ctcgagctcaagattcaatcgttcaccattcctcatttcccatctctgatgatggctatg
gcgagaccgacatactctgctatcacgcaaatgtctcccgataaaccagctatggtcttc
gttgcgaacaggaagcaagcgcgtaactctgctgctgacctcttcaacgcatgcattgcg
gatgatgatgaagaccgtttcctcaatgttgatctgtcggagatccaaccaatcctcgag
aagatcaatgagcaagcgcttgcgacttcgctttctcacggtatcggttacttccatgag
gctctcaattcgttcgacaagcgagctgtccaacacttgttcaaggttggtgctatccag
gtcatgattgtttcacgagactcttgctgggagattgacagcagtgctcatcttgttgtc
gtccaaggtacccagttttatgagggacgtgaacatagatatgtcgactaccccatcagc
gacattctgcagatgttcggcaaggctggcagagttggactggacaaatcagccaagggc
gtgctcatgctacctgcagtgaagcgcgagtactacaagaaattcttgaatgaggcgctg
ccgattgagagttacctccatgactatcttcacgacgcatttgtcgcggagattagcgca
aagacgatcgagtctacacaagaggctgttgactggtcgacatacacatacttctaccgt
cgccttctcgccaaccctagctactacaaccttcacgacacttcccacgaaggactcagt
gcgcacttgtccgatatggttgaacagaccctcaaggagctgacggatgccaacctcatt
gagcatgacgaagacgaggacgccatcacgccactcaacccatgcatgattgcagcgtac
tacaacatttcattcattacgatgcagacactcatgatgtcgctgaatggcagaaccagc
ttgaagggtgtactggagattatcactgccgccactgagtttgaagacattcagattcga
cgacacgaagatcatattcttcagcgcatctacgaccgtgttccgtttaagatgcaagag
ccgaacttcgagacaccacatttcaaggcgtttgtccttctccaagctcacttctcacgc
atgcagctgcctattgatcttgccaaggatcaagagactgtcttgcgaaaggttcttacc
attctcagcgccagtgtcgacgtcctctcctcggaagcacatctcaacgccatgtccgcc
atggagctctcccaaatggtcgtccaagcaatgtggcaaaaggactctcccctcaagcaa
atcccgcacttcgacgccgacaccatcaaggcggcacaaaaattcggcatcaacgacgtc
gacgacttcatcaacgccatggacgaagacgaaaacccagactacaagcaactcatctcg
gccctcaacgtcgaccaacgccaactcgccgacattgcaaacttcacaaacaacttctac
cccaacgtcgagctcgagcaccaactcgtcgaccctgaaaacatcgcttccaacaccccc
gcccaactcaaagtccgcgtcacgcgcaacctcgaagaagacgaggagcctaagaccgaa
gttcacgctccattttacccggccgacaagacggagagctggtggcttgtgcttggtgac
cagaaggagcgcacgctgcttgctatcaagaaagtacctatcctacgcaagcttgagacg
gtgctcgagtttacactggagaaacccggtagtcatgagttgacgctttatctggtgagt
gatagttatctgggtgttgatcaggcgcctacgtttcaggttgaggctgcggaggggatg
gaggaggatagtgaggaggaagaggaagaggatgaagagtag
DBGET
integrated database retrieval system
