Bipolaris oryzae: COCMIDRAFT_6472
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Entry
COCMIDRAFT_6472 CDS
T03125
Name
(RefSeq) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bor
Bipolaris oryzae
Pathway
bor00040
Pentose and glucuronate interconversions
bor01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
COCMIDRAFT_6472
Enzymes [BR:
bor01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
COCMIDRAFT_6472
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
CBM_21
Motif
Other DBs
NCBI-GeneID:
19124967
NCBI-ProteinID:
XP_007689296
JGI:
Cocmi1_6472
UniProt:
W6YXK3
LinkDB
All DBs
Position
Unknown
AA seq
308 aa
AA seq
DB search
MAVSTLAAPSSFVKRQASLEDVATTGFATTNGGTSGGKGGKVVKVATLADLEAAVKGDAA
AVVVITGPISGNGENVHIGSNKSVIGKDSSVVLTNFTLTAKAVKNVIIRNVAVRNVVHGD
AIAIQKAQNVWVDHVEVSSDRSHDKDYYDGLIDITHAADFVTVSNSYLHDHWKCSLVGHS
DKNGAEDKGHLTVTYNNNYWRNINSRAPSIRFGTGHIYNNYFEDVNDGINVRQGAQVLVQ
NNVWVNPMKALYTIDDGFAVGSGNDFGNSSNTAPVGSFTKAPYAVPQLLDAKDVKTAVVG
IAGATLRF
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggccgtttccactctggcagcaccctctagttttgtcaagcgccaagcgtctctagag
gatgttgcaaccactggttttgctaccacaaatggaggcacatcaggaggcaagggaggc
aaggtcgtcaaggttgctactcttgctgacctcgaggctgctgtcaagggtgatgcggcg
gctgttgttgtcatcaccggccccatctctggcaatggggagaatgtccacattggtagt
aacaaatctgtcattggcaaggactcatccgttgtcctcaccaatttcacactcacagca
aaggccgtcaagaacgttatcatccgtaatgttgccgtccgaaacgttgtacatggcgac
gccattgcgatccagaaagcccagaatgtctgggttgaccatgtcgaagtgtcatcggac
aggtcccacgacaaggactactacgacggcctaatcgacatcacacacgcagccgacttt
gtcaccgtttccaacagctacctgcacgaccactggaagtgctcactcgtgggacactcc
gacaagaacggcgccgaagataagggccatctcacggtcacgtacaacaacaactactgg
cgcaacatcaattcgcgcgccccatctatacgctttggtactggccacatctacaacaac
tactttgaggacgtcaacgacggcataaacgtacgccaaggcgcacaggtccttgtccag
aacaatgtttgggtcaaccccatgaaggcgctgtacactatcgacgatggctttgcagtc
ggctctggcaacgactttggtaatagcagcaacactgcgcccgtgggctcgtttacgaag
gcgccttatgcggtcccacagcttcttgatgccaaggatgtcaagactgctgttgttggt
attgctggtgcgacactcaggttttga
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