Bipolaris oryzae: COCMIDRAFT_79348
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Entry
COCMIDRAFT_79348 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K07466
replication factor A1
Organism
bor
Bipolaris oryzae
Pathway
bor03030
DNA replication
bor03420
Nucleotide excision repair
bor03430
Mismatch repair
bor03440
Homologous recombination
bor03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COCMIDRAFT_79348
03420 Nucleotide excision repair
COCMIDRAFT_79348
03430 Mismatch repair
COCMIDRAFT_79348
03440 Homologous recombination
COCMIDRAFT_79348
03460 Fanconi anemia pathway
COCMIDRAFT_79348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bor03000
]
COCMIDRAFT_79348
03032 DNA replication proteins [BR:
bor03032
]
COCMIDRAFT_79348
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_79348
Transcription factors [BR:
bor03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
COCMIDRAFT_79348
DNA replication proteins [BR:
bor03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
COCMIDRAFT_79348
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
COCMIDRAFT_79348
MMR (mismatch excision repair)
COCMIDRAFT_79348
DSBR (double strand breaks repair)
HR (homologous recombination)
COCMIDRAFT_79348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF4503
Motif
Other DBs
NCBI-GeneID:
19125459
NCBI-ProteinID:
XP_007682261
JGI:
Cocmi1_79348
UniProt:
W6ZHS8
LinkDB
All DBs
Position
Unknown
AA seq
611 aa
AA seq
DB search
MAEGAITQGAIQSIFQPSGCFVEHPVLQCVQIKTMEPKAGEANPVQRFRVVLSDIRNFIQ
TMIATTANEIVTSGQLKKGSIVRLLKYNPQRVKDKNILIIMELEVLSQYGELEKIGQPEA
LDTKPADAQPAAIPGNNFYGSKPAPAPQPQRSLPTHQSNPGTSSHPHLYPIESLSPYAHK
WTIRARCTHKSDMKEWHNQKGTGKLFSVNLLDDTGEIRATAFTEVADKLFPVFEEGVVYY
ISAPCRVTLAKKNFSNLPNDYELQFERDTEVEKAEDQDNKPQIRFNFTKIGDLTSVEKDT
TIDTIGVLKDVAEVTTITSKNTNKDFSKRELTLADDSQTSVRLTIWGKTAESFDVPLESI
VAFKGVKVSDFGGRSLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQSATFSTHQNMVSTTG
GSKNDAKPISAIIEEEAYLQDTPSYMSLRGSVLYVKDSTFAYPACSTQGCNKKVIEENPG
SWWCEKCQAAFPEPNYRYVLSANVGDHTGTLWLSCFDDAGQTIVGVSANEAMKMKMEDEE
NGSRNFTNLMQEATCKTFNFRVRAKMETYQDQPKPRYQVMNIYPLNFAQETNKLAQLIKQ
YNMNEDSLFVS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcagagggagcaatcacccaaggcgctattcagagcatctttcagccgagcggttgc
ttcgtggaacacccagtcctgcaatgcgtgcagatcaagaccatggagcccaaggcgggc
gaggcaaatcccgtacagcgctttcgggttgtgctgagcgacattcgcaacttcattcaa
accatgatcgctaccactgccaacgagatcgtcacttctggtcagctcaagaagggatca
atcgtacgacttctcaagtataatcctcaacgtgtcaaggacaagaacatcctgatcatc
atggaactagaagttctttcgcagtacggcgaacttgaaaagatcgggcagcctgaggct
ctggacaccaagcctgcagacgcccagcctgccgctatccccggcaataatttctacgga
tcgaagcctgcgcctgccccgcaacctcagcgctcgctacctactcatcagagtaaccct
ggaacttcttcacaccctcatctttatcctatcgaatctctttcgccatacgcccacaag
tggaccattcgagcacgatgcacccacaagagtgacatgaaagaatggcacaaccagaag
ggaacgggcaaacttttcagtgtaaatttgctggatgacactggcgaaattcgagcgaca
gctttcacagaagtcgctgacaagctgttcccagtctttgaagagggtgttgtgtactac
atctctgcgccctgcagagtgacgcttgcgaagaaaaatttctcaaacttgcccaacgac
tatgagctgcaatttgagcgtgacactgaggttgaaaaggcagaggatcaagacaacaag
ccacagattcgattcaacttcaccaagattggcgatctaacctcagttgaaaaggacaca
accatcgacacgattggtgtattgaaagacgttgctgaggttactacaataacttcaaag
aataccaacaaagacttcagcaagcgagaactgacactagccgatgacagtcaaacatcg
gtgcgactcaccatctggggcaaaactgccgagagtttcgatgtaccgctggagtcgatt
gttgctttcaagggagtaaaggtctccgactttggcggccgaagcttgagtctgttgagt
tccggttcaatgatggtcgatccggatattgacgaggctcacaagttgcgaggatggttc
aatgctgttggacagagtgctaccttctctacgcatcagaacatggtgtccactactggc
ggttctaagaacgacgcaaagccaatttcggccatcatcgaggaagaggcttatcttcaa
gacaccccctcatatatgagccttcgtggatcggtcctgtacgtcaaagattcgactttc
gcatatcctgcgtgttcgacacaaggctgtaacaagaaagtcattgaagaaaaccccggc
tcttggtggtgtgagaagtgccaggctgctttccctgagcccaattatcgctatgtgctc
agcgccaacgttggggatcacaccggcaccttgtggctcagttgctttgacgacgcgggt
caaacaatcgttggcgtgtcagcaaacgaagccatgaagatgaagatggaagacgaagaa
aatggctcgagaaactttacaaatcttatgcaggaagcgacctgtaagaccttcaacttt
cgagtacgtgcgaagatggagacatatcaggatcaacccaagccacgataccaagtcatg
aatatatatccactcaattttgctcaggaaaccaataagctcgcccagcttatcaagcag
tacaacatgaacgaggatagtttgtttgtcagctaa
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integrated database retrieval system
