Bipolaris oryzae: COCMIDRAFT_79706
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Entry
COCMIDRAFT_79706 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
bor
Bipolaris oryzae
Pathway
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_79706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_79706
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCMIDRAFT_79706
Spliceosome [BR:
bor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
COCMIDRAFT_79706
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
Phage_RB18_ORF43
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
19125530
NCBI-ProteinID:
XP_007682278
JGI:
Cocmi1_79706
UniProt:
W7A5J4
LinkDB
All DBs
Position
Unknown
AA seq
707 aa
AA seq
DB search
MDPKRRKIGDQDVSALRLASRQKYLAEREAQQLAILRRTVADEAEEEERLGSRLSERERK
EFAKNRETLRLAEERNGIDEHRDGFMIPDADFSNKAEVLNRRDDASHFKSEYQQWEEDQM
NKIKSQTKKAERVQEDDYEFVFDTSNQIQFQQDISSRIDPAKQALQAQLDSAEKRAKTID
EVRKSLPVYKYREEILDAVSKPEFKLLVLSATINASKFSKYFDDAPTFYVEGRTFPINIL
YTSAPEANYLSAGITSALQIHLAAELPGDILMFLTGEEEIQAAVENIETTMKKLGGRAKE
LIVCPLYSALPPDAQAKVFEPTPPNARKLVISTDIAETSLTIDGIRHVIDSGYSKQSNYI
SSNGISSLIVSPISRASANQRAGRAGRTSEGYCYRLYTKHAFYNELSETTEPELLRANLD
GVVLTLKALGIDNLLEFEFLDPPSSTSLIKSLENLYALGALDSTGKLTRLGRRMAELPLD
IKLSKAILASEKYGCREEILSIVSVLGESASLFLRPKDKRVAADAARARFSSKEGGDFMT
FLNIWDQFEDSGFDSRWATENFLQWRCLNRARDVRDQLAKLCDRVEVPFSSCGSTNHVAI
RKCITSAYFINAARLARDGLSYRAISNSGMTIFIHPSSSLIENRPKWIVYFEIVESSKTY
ARAVLPISPEWLVEVAPHMHTESSIGKLGDDKKMPKEKSMVSATARR
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggatccaaaacgtcgcaagatcggcgatcaagatgtcagcgcacttcgcctcgcctca
cgacaaaagtaccttgccgaacgagaggcgcaacagctcgccatcctccgtcgcacagtc
gccgatgaagcagaagaggaagaaagactaggatccagattatcagagagggaacgcaaa
gagtttgcaaagaatagagagactctgaggttggccgaggaaaggaacggcattgatgag
caccgcgatgggttcatgatccccgatgccgacttctcgaacaaggccgaagtgctcaac
cgtcgtgacgacgcgagccacttcaagtcggaataccagcagtgggaggaagaccagatg
aataaaatcaaaagccagaccaagaaggcagagcgcgtgcaggaggacgactacgagttt
gttttcgatacttcgaatcagattcagttccaacaagacatttcgagtcgcatcgatccc
gctaaacaggctctccaagcccaactcgactcagcggaaaagcgggccaagactattgat
gaggttcgcaaaagtctacctgtttacaagtaccgtgaggaaatactcgatgccgtctcc
aagccagagttcaagctgctggttctttctgccacgatcaacgcctccaaattctcaaag
tatttcgacgatgcacctacgttttatgtcgagggcaggacctttccgattaacatcctc
tacacgagcgctccagaagccaactaccttagcgccggcatcacgtctgctctccaaatt
cacttggctgcagagcttccgggagacatactcatgtttcttactggagaggaagagatt
caagctgccgtagaaaacatagaaacaacaatgaagaagctgggcggacgggctaaagaa
ctgattgtttgtccgctgtacagtgcgcttccgccagatgcacaagccaaggtctttgag
cctacgccacccaatgctagaaagctggttatttctaccgacattgctgagacatcgcta
actatagacggcattcgccatgtcattgactcgggctatagtaagcagagtaattacata
tcgtcaaacggcatcagctcgctgatcgttagccccatttctcgtgcaagcgccaaccag
cgggctggtcgtgctggacgcacaagcgagggatattgctaccgcctgtatacaaaacac
gccttttacaatgagctcagtgaaactactgagcccgagctactgcgcgcaaaccttgac
ggtgtcgtcctgacattaaaggctttgggcattgacaatctgcttgaatttgagttcctg
gatcctccatcaagcacatctctcatcaagtctctggaaaatctgtatgcactgggggct
ctggactctactggaaaattgactcgactcggtcgccgaatggcagaattgccacttgac
atcaaactttccaaagctatacttgcatcggagaagtacggctgtcgcgaggaaatattg
tctattgtcagcgttttgggagagtcagcctcactcttcctccggccaaaagacaaaaga
gtggcggcagatgctgctcgagcccgcttcagcagcaaagaaggcggtgacttcatgaca
tttctcaacatatgggaccagtttgaggacagtggctttgatagtcggtgggcaaccgag
aactttctacagtggagatgcctcaaccgagctcgcgacgtgcgcgatcagttggccaag
ctctgcgatcgtgtcgaggtaccattttccagctgtggtagcacgaaccatgttgctatc
cgtaagtgcataacatcggcttattttatcaacgctgccaggctagcacgcgacggattg
agttatcgtgccatttctaacagcgggatgaccatcttcatacacccatcgtcaagtctg
atcgagaatcgtccaaaatggatcgtctatttcgagattgtagagtcatccaagacttat
gcacgagccgttctgcctatcagtccagaatggctagtcgaggtagcgcctcacatgcac
acagagagctcgattggtaagcttggcgacgacaagaagatgccaaaggagaaatcgatg
gtctcggcaacagcacgacgatga
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