Bipolaris oryzae: COCMIDRAFT_81267
Help
Entry
COCMIDRAFT_81267 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bor
Bipolaris oryzae
Pathway
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_81267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_81267
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_81267
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
COCMIDRAFT_81267
Spliceosome [BR:
bor03041
]
Complex B
Other components
Prp19-related factors
COCMIDRAFT_81267
Complex C
COCMIDRAFT_81267
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_2
Mad3_BUB1_I
TPR_8
ARM_TT21
ARM_TT21_C
APOBEC_C
Motif
Other DBs
NCBI-GeneID:
19125837
NCBI-ProteinID:
XP_007682761
JGI:
Cocmi1_81267
UniProt:
W6ZL43
LinkDB
All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
MPGELLRTVTASLSRPTKRKMEPSTDLFLITDQDVAYEQDIQRNAGSVKPWLDYYSFKKS
RGSILEQAFVLERAVTTLPRSYKLWKLYLELRTKHLANKNPAKFAPHYVKVNALFERALV
LLNKMPRIWEMYLNFLMQQPLVTTTRRTFDRALRALPLTQHNRIWALYRPFATSASGETA
VKIWRRYMQIHPEDAEDFIELLKDMRKYTEAVKKYMEILNNPRFKSKEAKGPFQFWTEMI
DLIIDHAKEIDTSDDSGIDVEKIIQSGITKFPDQRGILWVGLARYWMHKGEYEKARDVFE
EGVTTVMTVRDFSVVFDTYVEAEETMIGIKLNEAAVRSEKGKIDEAADADLDIRMVRFES
LMQRRPFLLNDVMLRQNPHNVIEWEKRVALWGDNKKEVVQTYTDAIAAINPKKAVGKFHE
LWTNYAKIYEAGGDLQNARVIMEKAVKVPFKSVSELAEMWCEWAEMELRNENFDKAVDIM
AKATQAPKRSNVDYFDESLSPQQRVHKSWKLWSFYVDLVESVSTLEETRKIYERIFELRI
ATPQTIVNYANLLEENKYFEDCFKVYERGLDLFSYPVAFEIWNLYLTKAVDRKIGMERLR
DLFEQAVEDCPPKFAKVLYLMYGALEEDRGLARHAMRIYERATRAVADEDRMEMFNFYIT
KSASNFGLTSTRPIYERAIAALPDAEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDP
RTNPEFWKKWESFEVQHGNEDTYKEMLRIKRSVQAQYNTDVNFIASQAVARGQQNGAAAN
EDGTADPADEDAMAALERQARAPAGFVAASTGPQGGNIKPAEEPTANPDAIDLDDDL
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcgaactcctcaggaccgtgaccgcgagcctctcgcggcccaccaagcgcaag
atggagccctcgaccgaccttttcctcatcaccgaccaggacgtcgcgtacgaacaggac
atccagcgcaatgccggcagcgtcaagccatggctcgactactacagcttcaaaaagtca
cgtgggagtatcctagagcaggcctttgtgctcgagcgcgcagtcaccacgctcccgcgc
tcctacaagctttggaagctgtaccttgagttgcggacaaagcaccttgccaacaagaac
ccggccaagttcgcgccccactatgtcaaggtcaacgcccttttcgagcgtgcccttgtc
ctgcttaacaagatgccgcgaatctgggaaatgtacctcaatttcctcatgcagcagccg
ctcgtgaccactacccgacgtactttcgaccgagcattgcgcgccctccccctgacccaa
cacaaccgcatctgggccttgtaccgacccttcgcgacgtctgcgtctggtgagacggct
gtcaagatctggcgccggtacatgcaaatccaccctgaagatgccgaggatttcattgag
ctcctcaaggacatgcgcaagtacaccgaggccgtcaaaaagtacatggagattctcaac
aatcctcgcttcaaaagcaaagaagcaaaggggcctttccagttctggactgagatgatt
gatcttatcatcgatcatgctaaggaaatcgataccagcgacgacagcggcatcgacgtc
gagaaaatcatccagagcggcatcacaaagtttcccgatcagcgaggtatcctgtgggtt
ggtctggcacgttattggatgcacaagggcgaatacgaaaaagcgcgggacgtcttcgaa
gagggtgtcactacagtcatgactgtgcgcgacttttcagtcgttttcgacacatatgtg
gaagccgaggaaaccatgattggtatcaaactaaacgaggctgctgtccggtccgagaag
ggcaaaatcgacgaggccgctgacgctgaccttgacatcagaatggttcgcttcgaatcg
ctgatgcaaagaagaccattcctactcaacgatgtcatgttgcgacagaatccgcacaat
gtcattgagtgggagaagcgcgttgcgctatggggcgataacaagaaagaggttgtacag
acatacaccgatgccattgccgcgatcaaccccaagaaggcagttggcaagttccacgaa
ctctggaccaactacgccaagatctacgaagccggcggtgatcttcagaatgcgcgcgtc
attatggagaaggccgtcaaggtgcctttcaagtccgtttccgaactggctgagatgtgg
tgcgaatgggcagagatggagctccgcaacgaaaatttcgacaaggccgtcgacatcatg
gccaaggctacgcaagcacccaaacgatccaatgtcgactactttgacgaatcgctttct
ccacaacagcgtgtacataagagctggaaattgtggagtttctacgttgatcttgtcgag
agtgtcagtacgttggaagagacaagaaagatatatgaaaggatttttgagcttcgaatt
gctacaccgcagacgattgtcaactacgccaacttgctggaagagaacaagtactttgaa
gactgcttcaaggtatatgagcgtggattagatcttttcagctatcctgttgcttttgag
atttggaatctgtacctgaccaaggctgtcgaccgaaagattggtatggaacgactgcga
gacctgtttgaacaggctgtcgaggattgcccgccaaagttcgccaaggtactgtatctc
atgtacggtgcccttgaggaagaccgtggtctggccaggcacgccatgcgcatctacgaa
cgtgctacacgcgccgtagcggacgaagacaggatggaaatgtttaatttctacatcacc
aagtcggcatccaactttggtcttacttctacacgaccaatttacgagcgcgccattgcc
gctctgcccgacgcagaagccaaggaaatgtgtctcaagtttgctgagatggaacgacgt
ctgggagaaattgaccgagcgcgagccatctacggtcatgccagtcagttctgcgatccg
aggacaaaccccgagttctggaagaagtgggagtctttcgaagtccaacacggaaacgaa
gatacctacaaggagatgctgcgcatcaagcggagtgtccaggctcaatacaataccgat
gtcaacttcattgcttcccaagctgttgcccgcggccagcaaaatggtgcggccgccaac
gaagatgggaccgcagaccctgccgatgaagacgcaatggctgccctcgaacgccaagct
cgtgcacctgctggctttgtcgctgctagcacaggcccgcagggtggcaacatcaagcct
gccgaagagccaacagcgaacccagacgcgatcgatctcgacgacgatctatga
DBGET
integrated database retrieval system
