Bipolaris oryzae: COCMIDRAFT_85978
Help
Entry
COCMIDRAFT_85978 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bor01009
]
COCMIDRAFT_85978
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_85978
04131 Membrane trafficking [BR:
bor04131
]
COCMIDRAFT_85978
03036 Chromosome and associated proteins [BR:
bor03036
]
COCMIDRAFT_85978
Enzymes [BR:
bor01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
COCMIDRAFT_85978
Protein phosphatases and associated proteins [BR:
bor01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
COCMIDRAFT_85978
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
COCMIDRAFT_85978
Membrane trafficking [BR:
bor04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
COCMIDRAFT_85978
Chromosome and associated proteins [BR:
bor03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
COCMIDRAFT_85978
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Arb2-like
Arb2
DUF7607
Motif
Other DBs
NCBI-GeneID:
19126775
NCBI-ProteinID:
XP_007684563
JGI:
Cocmi1_85978
UniProt:
W6ZGH2
LinkDB
All DBs
Position
Unknown
AA seq
847 aa
AA seq
DB search
MDDEDFPMGEDSIIISTEPNGDHAPETVVPSKIFGNSKGPLLSKQEQLPFHSPSKGPLLQ
PNVHRSNPGSHRTTKSPSSWSDKMNASRPTPAQHSSPQVRIPPKPRSSLVYPTSKTGLVY
DPRMRFHAELPDMNINPDDIHPEDPRRIHSIFEELKQAGLVASSTSEDDQEDHCWRIAAR
FATRPEILLIHTEEHYDLVESFQNMTSDELKYEAERLDSIYLNNSTYECAKLAAGGAIEA
CKAVVQGAVRNAIAIIRPPGHHAESDQPSGFCIFNNVPIAARVCQNAYPETCRKVLILDW
DVHHGNGIQHAFYDDPNVLYISLHVFKDGTFYPNLPDGNLDYCGEGRGEGKNVNIPWAEH
GMGDSEYLYAFQQVVMPIATEFNPDLVIISAGFDAAEGDLLGGCFVTPACYGHMTHMLMS
LAKGKLVVCLEGGYNLRSIARSALAVTKVLMLEPPDRLRDDLPAPKDSAIYIVENVKRQH
SKYWKSLYPKHLDKTDPGYQDAYRFHEIIREWQSQRLAAEHSMVPLPPLQINKAGLAQTF
EHNIIATPKFMEQYPLLVIFHDPPSLQDHSDPMSGKRELHNTWLTDVTKRYIDWAIKNDF
QVIDVNIPRVVAVEDPNIGFTKSDNSVVRAQQTRELASYLWENYIEPNEATQVFLMGVGD
AYLGLVDLLSHNENCTDPDSPVECLIGFVAETTIQSIKRATDDTISSWYHSHSMIFVKNS
HFVWDPSRQRKMRKKLGNLIKSSQDTLDDMLEQHLEEVQELLLEKKSEFEEMNDISSRTD
EGPQSTSIGLQSSPLPRGPYDSKRFEPGGRQENSTNALKSPKMPAVGLFAVSPKTSGTRS
PMKRPSS
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgaagacttcccgatgggggaagactcaataatcatctccacagagccaaac
ggtgaccatgcaccagaaacagtcgttccttctaaaatctttggcaatagtaaaggccca
ctgctgtccaaacaagaacaactacctttccacagcccatccaaaggtccattgttgcag
ccgaatgtacatcgaagtaaccccgggtcccaccgaacgaccaaatcacctagtagctgg
tcagacaagatgaatgcgtcgagaccgactccagctcaacattctagtccacaagttcgc
atacctcctaagccacgttcctcacttgtttacccaacatcaaaaacgggactcgtttac
gaccctcgtatgcgatttcatgccgaactcccagatatgaacatcaacccagacgatatt
catcctgaagaccctcggcgcatccattcgatttttgaggagctcaagcaagctggtcta
gtggcttctagcacctcagaagatgaccaagaagatcactgttggagaattgcggcccga
ttcgccacaagacctgagatactgctcattcatactgaggaacattatgacctcgtagag
tcattccaaaatatgacctcggacgagttaaaatacgaagctgagcgccttgattcaatc
tatctcaacaactcgacttacgaatgcgctaagctcgcggctggcggtgctatcgaagct
tgtaaagcggtagtacagggagctgtacgcaacgccattgctatcatccgccctcccgga
caccatgcggaaagcgatcaaccgtcagggttctgcatctttaacaacgtcccgattgct
gcacgcgtgtgtcagaatgcttatccagaaacttgtcgcaaagtcttgattttggactgg
gatgtacaccacggcaacggcattcagcatgcattctacgatgaccctaatgttctttac
atatcgctgcatgtcttcaaggatggaaccttctatcctaatctacctgacggcaatctt
gactattgcggtgaaggccgtggtgaaggaaagaacgtgaatattccatgggcagagcat
gggatgggcgattcggaatacctttatgctttccaacaagttgttatgccgatcgctaca
gaattcaaccccgatcttgtcattatctcagctgggtttgatgcagccgagggagactta
ttgggtgggtgttttgttacgcctgcatgctatggtcacatgacgcatatgctcatgagc
ttggccaagggaaagctcgttgtgtgtctcgaaggtggatataatctgcgttcgattgca
cgctctgcgctagcggtaaccaaagtgctcatgctagagcctccggatcgcttgcgtgat
gatcttccagcaccaaaggacagtgctatatacattgtagagaacgtcaaacgtcagcat
tcaaagtattggaagtcgctttatccaaaacacctagataaaacagaccctggataccag
gatgcataccggtttcacgaaattatccgagaatggcagagtcaacgtctagctgcagag
cactcgatggttccccttcctccccttcaaatcaacaaggccggcttggcgcagactttt
gagcacaacatcatcgctacaccgaagtttatggagcaatatcccctactcgtgatattc
catgacccgccgagtctccaagatcactccgatcccatgtctggcaagagagagctacac
aatacatggctcactgatgttaccaagaggtacattgactgggccatcaaaaatgacttc
caggtcattgacgtgaatattcccagagtagtagcggtcgaggatccgaacattggtttc
accaaatcagacaactcggtggttcgtgcacaacaaacgcgtgagctcgcgagctatcta
tgggagaactatatcgagcctaatgaagcaacacaagtcttcttaatgggcgtcggtgat
gcctatctaggacttgtagatttgcttagccacaacgaaaactgtaccgatcccgatagc
ccggtcgaatgtctcatcggttttgtggctgaaacaacgattcagtcgataaagcgagcg
acggacgataccatctctagttggtaccactcgcattcgatgatctttgtaaagaatagc
cacttcgtttgggacccgagccgtcaacgtaagatgcgcaagaagctcggaaatctgata
aagtcgtctcaggataccctagatgacatgctggagcagcatttggaggaagttcaggaa
ctgcttttggagaagaagagcgagttcgaagagatgaatgatatatcaagccgtactgac
gaggggccgcagagcacatccataggactgcagagttcacccctcccaagaggtccttac
gattcgaagagattcgagcccggcggcagacaagaaaactcgaccaatgcactgaaaagc
cctaagatgccagcggttggtctgttcgctgtaagccccaagacgtcagggaccagaagt
cccatgaaaagaccgtcttcataa
DBGET
integrated database retrieval system
