KEGG   Bipolaris oryzae: COCMIDRAFT_87157
Entry
COCMIDRAFT_87157  CDS       T03125                                 
Name
(RefSeq) hypothetical protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
bor  Bipolaris oryzae
Pathway
bor03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bor00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCMIDRAFT_87157
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bor03019]
    COCMIDRAFT_87157
Messenger RNA biogenesis [BR:bor03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCMIDRAFT_87157
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     COCMIDRAFT_87157
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 19127000
NCBI-ProteinID: XP_007684963
JGI: Cocmi1_87157
UniProt: W6ZET1
LinkDB
Position
Unknown
AA seq 241 aa
MAFNNQQQPPRGPAAAGGNPDFNAMLQRSMQAPGSQLQPQISELPRGPSPGMGYEGVYSA
TPPPQLSQQQPQHGPNVLGGARGGLPQPILPVDLPPQAFLTSAMLLDMVDKKVDVLLRDE
KEYIGILRSYDQFANLVLTECYERIAARNPDATPSSDPSIPRWLINDVKLPGVMTVRGEN
VTICATVDLDREEHPRGAKFAEEDQVRALAASQKAERKEIDSRRAKALRQAGIEPGFGMQ
G
NT seq 726 nt   +upstreamnt  +downstreamnt
atggccttcaacaaccaacagcagccgcccagaggccccgcggccgctggaggaaacccg
gacttcaacgccatgctccagcgctccatgcaggcgccgggcagccaactgcagccgcaa
atctctgagcttcctcgtgggccgtcgccaggtatgggctacgagggcgtatacagtgcc
acaccaccacctcagctgtcgcagcaacaaccacaacatggacccaacgtgcttggcgga
gcgcgtggcggtcttccgcagccgatactccccgtcgacctaccaccgcaggcctttttg
acgtcggctatgttgctagatatggtggacaagaaggttgatgtattgctccgcgatgag
aaagagtacattggcatcctacgttcctacgatcaattcgcaaaccttgttcttacagaa
tgctacgagcgaatagcagcacgcaaccccgacgcaacaccttcctctgatccctcgatc
ccccgatggctgataaacgatgtcaagctccccggcgtcatgactgtacgaggcgagaat
gtcaccatatgcgcaaccgttgaccttgaccgggaagagcatcccaggggcgccaagttt
gcagaggaggatcaagtgagagcgttggcagcgtcacaaaaagcagagaggaaggagata
gactcacggcgagcaaaagccctgaggcaagcaggcattgagcccgggttcggcatgcaa
ggataa

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