Bipolaris oryzae: COCMIDRAFT_87655
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Entry
COCMIDRAFT_87655 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K11701
helicase required for RNAi-mediated heterochromatin assembly 1 [EC:
5.6.2.5
]
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bor03036
]
COCMIDRAFT_87655
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
COCMIDRAFT_87655
Chromosome and associated proteins [BR:
bor03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
COCMIDRAFT_87655
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
Viral_helicase1
ResIII
DEAD
PhoH
AAA_16
SLFN-g3_helicase
AAA_25
RuvB_N
Motif
Other DBs
NCBI-GeneID:
19127109
NCBI-ProteinID:
XP_007685170
JGI:
Cocmi1_87655
UniProt:
W6ZWW3
LinkDB
All DBs
Position
Unknown
AA seq
1227 aa
AA seq
DB search
MVRRSGKRSNRVSHSGSRSTASSRSPNINSGNVYASLGEMAGSEAEMDSPFLPESCLLDE
NIPMSGTARNNNEIYEYFERAKKPVIGGAWLQQPEIPNPSEVLRDTSGFINSESLIELDD
HVRPHKVEGAYDDKEDYLRTLYELLREDTIRPLREAIDEVRAEPFKDEAEYQNQSIGIYD
PVYIKSLVLSPRGLATRVAFSLGRAKKHVRWGQSKRLITGSLVALSSTDDAFKTQCVLAI
VAARPISALEQNPPTIDLFFARPEEQEIDPMRKWIMVESRASFFEANRHTLLALQQLMRE
PFMLSKYLVYAQKEVDPPAYIQHNPYTNLISLVSMEDAEDYKNVNVLQNWPAASSHSLDE
SQSRALKRMLTSELAIVQGPPGTGKTFVSVVALQIARDNLRKKDAPIIVTAQTNHALDQL
LRHTSVFEPNYIRLGGRSKDNDIKKQTLFEVKSRTPQQKGTGSGIKKKASGKIKSLATEC
QKLLAPIEANKGLFDHDLLLKFGLITQKQAESLEMDSQDAIGISPSNHPGILMEQWLGRC
LTLCDRPTLPEDLNWGYEEEDFEVEQLQELEAEAVAQDDDDIEALRGPVIEISDNFKGTG
NYLSNDDIRDILHKTNDLYTICTANRGAIYNFFKREVKRTIATEIRKIAKTYHDNVVQRK
IGVFEENARILRGARIIGCTTTGLAKYRALLSSLHPRLCIVEEAAETLEAPVTAACFPSL
EHLILVGDHQQLRPHTQVRAFEDEPYFLNLSLFERLVRNNVAFDTLTRQRRMIPEIRRLL
CPIYQDKLKDHPNVENTGHRPPVEGMGGNNSFFFCHEWPESRDAYMSSLNGREADMVVQF
LDYLVLNGVDASKITILTFYNGQRRQVTQLIRTHPNLGIYRGIQVVTVDSYQGEENDIVL
LSLVRSNKKNSIGFLSSENRACVALSRAKRGFYIFGNAELLASQSSIWGSVVEIMFKNKK
PKVKAGQERRVGYHLPLVCSNHGRKMWCEDPSDFELIKGGCDVKCDGVLPCGHRCPYTCH
PFEHDRINCTQKCARRVERCGHPCVAECCDPCRCHMCERRSDGIKPVLKVGPRGTVSISG
PRSNMKNLSLETKLDVPKNSNEGTASSTTRSGMTQLRRGATEQWDAYAYGGGVEDDDLRV
RAQIRQEEAEYLKRIQTCTSKPMQPSVGNRLISTSSVKAGSVETDTDLLIDFDAEAQIQP
GQDQPRGDYASIAAQSASQTPYTNLLD
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggtacgccgctctgggaaaaggtcaaaccgtgtcagccactcgggaagtcgcagcacg
gcttcttccagaagtcccaacataaattctggcaatgtctatgcaagcctgggcgaaatg
gcagggagtgaagcggaaatggactctcccttcctcccagagagctgtctgctcgacgag
aacattcccatgtctggcacagcccgtaacaacaacgagatttacgaatatttcgagcgc
gctaagaagccagttatcggtggggcatggctccagcaacctgagattccaaacccttca
gaagtcctacgtgacacgtccggcttcatcaacagcgaatcactcatcgaattagacgac
cacgttcgcccacacaaggtggagggtgcatacgacgacaaagaagactacttgagaact
ttgtatgagctcctgcgcgaagacactattcgtcctctgcgagaggctattgatgaggtc
cgtgccgagcctttcaaagacgaagcagagtatcagaaccaaagcatcggcatctatgac
cccgtctacatcaagtcgcttgtactctcacccagaggcctggcgacaagagttgcattc
tcactcggacgggccaagaagcatgtcagatgggggcagtcgaagcggctcatcactgga
tcacttgtcgcattatcgtccacagatgatgccttcaagacacagtgtgttcttgccatt
gtcgcagcccgccccatcagtgcattggaacaaaacccgcccacgatcgacttgttcttt
gctcgacccgaagagcaagaaattgatcccatgcgcaaatggatcatggtagagtctaga
gccagcttcttcgaggcaaacaggcatacgctgttggctttgcagcaactgatgagggag
ccattcatgctatcaaagtaccttgtatacgctcagaaggaggtggaccctccggcgtac
atccaacacaacccgtacacgaatctcatctctcttgtcagcatggaggatgctgaggac
tataagaatgtcaatgtactccagaattggcctgcagcgtcttctcattcccttgacgaa
tcgcagagcagagcactgaagcgtatgctcacaagcgagttggctatcgtacaaggccct
cctggtacaggaaaaacgtttgtatctgttgtcgctctgcaaatcgctcgcgataatttg
cgcaagaaagacgcacctatcattgtgactgcgcagacgaatcacgctctcgaccaacta
ttacgacatacatctgtattcgaaccaaactacattcggctaggaggaaggagcaaggac
aacgatataaagaagcagacactgttcgaagtcaaatcaaggacaccacagcaaaaaggg
actggtagcggtatcaagaagaaagcgtccggcaagatcaaaagcttggcaactgaatgc
cagaaattgctcgctcctattgaagccaacaaagggctgtttgatcacgatttactctta
aagtttgggttaatcactcagaagcaggcagaatcactggagatggactcacaagacgcc
atagggatctcgccatccaaccatccaggcattctgatggaacaatggcttggtagatgt
cttacgttatgcgacagaccaactctccctgaggatctcaactggggctatgaagaagag
gattttgaagtcgagcaattgcaggaacttgaggcagaagcggtagcacaggatgatgac
gatatcgaagctcttcgcggacctgtcattgaaatcagcgataacttcaagggcactggt
aactatttgagtaatgatgacattcgggacatcttgcacaagacgaatgatctttacacg
atctgtacggctaaccgaggtgcgatctacaactttttcaagcgggaagtgaagcgaaca
attgcaacagaaatccgcaagattgcaaagacctaccatgacaatgttgtacaacgcaag
atcggagtgttcgaagagaacgcacgtattctgcgcggtgcacgtattattggatgcaca
actacaggactcgcaaagtaccgggctcttctatccagccttcatccgcgcttgtgtatc
gtagaagaggcagccgagactctcgaggcacctgtgactgcagcctgcttccctagcctc
gagcacctaatcttggttggcgatcaccagcagcttcgtcctcacactcaggtacgggcc
tttgaagacgagccatacttcttaaacttgtcgctcttcgagcgcctagttcggaacaat
gttgcgttcgacacgttgacgcgacagcgtcgcatgataccagaaatacgacgtctctta
tgtccaatctaccaagacaagctcaaagatcaccccaatgtggaaaacactggccatcgt
ccaccagttgaaggaatgggcggaaacaacagttttttcttctgtcatgaatggccagag
tcgcgcgacgcttatatgtcttcattgaatggacgagaagcggacatggtggtgcaattt
ctcgattacttggttctcaatggcgttgatgcctccaagatcacaattttgacgttctac
aacggccaaagaaggcaggtaactcaacttataagaacgcacccaaatctgggaatttat
cgaggtatccaagtcgtcactgtcgatagctaccaaggcgaggagaacgatattgtccta
ctctccctggttcgctccaacaagaagaattccattggctttctcagctccgaaaatcgc
gcatgcgtggcattgtcacgagcaaaacgagggttttacattttcgggaatgcagagctt
ctggctagccaaagcagtatatggggcagcgtggtcgaaatcatgttcaagaacaagaag
ccaaaggtcaaggctggccaggagcggcgagtggggtaccatctcccacttgtatgcagc
aaccatgggcgtaagatgtggtgtgaagaccctagtgattttgagctcatcaagggcggt
tgtgacgtcaaatgcgacggggtattgccttgtggacaccgttgtccgtacacgtgtcac
cccttcgagcacgacagaatcaactgtacacaaaagtgtgctaggcgtgtagagagatgt
ggccacccctgtgttgctgagtgctgcgatccatgcaggtgccatatgtgtgaacgtcga
agcgatggtatcaagcctgtcttgaaagtgggaccgagaggaactgtttccattagcgga
ccgcgctccaacatgaagaacttgagcctcgaaaccaaacttgacgttcctaaaaattct
aatgagggaacggcttcctccaccacgcgctcgggaatgacccaactgcgacgaggtgct
acggagcaatgggatgcttacgcatatggcggcggtgttgaagatgacgacctgagagtc
cgcgcgcagataaggcaagaagaggctgagtacctcaaacgtattcagacatgtacttca
aagcctatgcagccttccgttggcaaccgactcatctcgacttcatcagttaaggcaggg
agtgttgagacagacaccgacttgctcattgactttgatgctgaggcgcagattcaacca
gggcaggatcagccgagaggcgattatgcgagtattgcagcacagagtgctagtcagact
ccgtatacgaacctgcttgactaa
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integrated database retrieval system
