KEGG   Bipolaris oryzae: COCMIDRAFT_90003
Entry
COCMIDRAFT_90003  CDS       T03125                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
bor  Bipolaris oryzae
Pathway
bor03013  Nucleocytoplasmic transport
bor03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bor00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCMIDRAFT_90003
  09122 Translation
   03013 Nucleocytoplasmic transport
    COCMIDRAFT_90003
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bor03019]
    COCMIDRAFT_90003
   03041 Spliceosome [BR:bor03041]
    COCMIDRAFT_90003
Messenger RNA biogenesis [BR:bor03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     COCMIDRAFT_90003
Spliceosome [BR:bor03041]
 Complex C
  Other components
   EJC/TREX
    COCMIDRAFT_90003
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    COCMIDRAFT_90003
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st adh_short WD40 Beta-prop_WDR5 WD40_CDC20-Fz adh_short_C2 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_1st WDR55 EIF3I Beta-prop_WDR3_2nd ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 KR Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_Aladin DSE1_N Beta-prop_EIPR1 SDR WD40_MABP1-WDR62_2nd CFAP251_N Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_NOL10_N Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Tricorn_2nd Polysacc_synt_2 Cytochrom_D1 Beta-prop_ACSF4 Beta-prop_WDR36-Utp21_1st Beta-prop_SPT8 Beta-prop_SCAP choice_anch_I PAC11
Other DBs
NCBI-GeneID: 19127595
NCBI-ProteinID: XP_007686033
JGI: Cocmi1_90003
UniProt: W6Z6X3
LinkDB
Position
Unknown
AA seq 646 aa
MPPPVRARPIKKDDFEAAFKKLKTSVYQDSTRPAAVSSSHYIRSISWNASGTFIATGAAD
KTLRIWNPEKTNVKNSTELRTPNAPPLTNLERVSFHPINENELASCGTDGMVRFWDIRSK
ASVGEVKVGEQPFTLAWTPDGNEIVVGRKDNLLVNVDRAALSIISEHRQPLQTNQCVFDW
SGNHLYSTAGDGSVRLLRYPSFENALTLNAHTSACYAVSMSPSGEYLAAGGGDALVSLWD
TQEWICVRTLELTGGLVKSVDFSFDGSYITAGSDDKEEKKIRIAHVESGETVYTIDVPTP
AAHVAWHPCRYILAYSADNLGLKILPFSTTPIQPNSLFSAKGLVVVITGGGTGLGLAIAS
ALYQNGAEKIYILGRRQDVLRTAISKLQSDNVAYKPASTSVLNDIVCDVTDLASVKAAAE
HIKKDIGYVDVLINNAGVLGPRNGQDIYKASSIHELADAMTSDYDGWSSAMAINTQSVIG
VSATFLPLLEAANTRRGWAPGKVTGAGNPRARDTKKLADAGVDADDDRLAHIITVASVAS
YMRWVSAGLAYNASKSAAAHLGKMMATFLAEWGVRSNIVCPGPYPSDMTADIKPVYGTSQ
VPQGRMGGLNDISGLMLFLVGKGGAYVNGTAQLTDGGRVGVFPATY
NT seq 1941 nt   +upstreamnt  +downstreamnt
atgccgcccccagtccgcgcgcgtccgatcaagaaagacgacttcgaggcagcatttaag
aaactcaagacgtccgtctatcaagacagcacgcgcccggccgccgtctcctcgtcgcac
tacatccgctcgatatcgtggaacgcctctggaacttttatcgccacgggggctgcagac
aaaacgttgcgcatatggaatcccgagaagaccaacgttaagaactcgaccgagctccgt
acgcccaacgcgcctcccttgaccaacctcgaacgcgtatctttccaccccatcaatgag
aatgagcttgcaagctgtggtaccgatggtatggtcaggttctgggacattcgctccaag
gccagtgtgggtgaagtcaaggtcggcgagcagccctttactctggcatggacaccagac
ggcaacgagatcgtcgtaggaagaaaggataacctcctcgtcaatgtcgatagagcagcc
ctcagtatcatctccgagcaccgtcagcccctccagaccaaccagtgtgtctttgattgg
tctggtaaccacctttactcgacagctggtgatggaagcgttagattactacgctatccg
tcgttcgaaaacgctctcacactgaacgcccatacttctgcatgctatgctgtctccatg
tcgcccagcggcgaatacctggcagctggtggaggagatgcgttggtttcactttgggat
acacaggaatggatttgcgtgagaactttggagttgacaggaggcctcgttaagagtgtg
gacttctcgtttgatggcagctacatcaccgctggctccgacgataaggaagaaaagaag
attcgcatcgcacatgtggaatcgggcgaaaccgtatacaccatcgatgttcccacaccc
gcagcgcatgtagcatggcacccatgccgatatatactggcctattcagctgacaaccta
ggcctcaagattctgccgttttctacaacacctatacaaccgaacagtctattctccgcc
aaggggctggtagtagtcattactggcggaggtactggtctcggtctcgccatagcctca
gccctctaccaaaacggcgccgaaaaaatctacatcctcggccgccgacaagacgtcctc
cgcaccgccatctccaaactccaatccgacaatgtagcatacaaacccgccagcacctcc
gtcctcaatgatatcgtctgcgatgtcaccgacctcgcctccgtcaaagccgccgccgag
cacatcaagaaagacatcggctacgtcgacgtgctaatcaacaacgccggcgtcctcggc
cccagaaacgggcaggacatctacaaagcatcttcgatccacgaactcgccgacgcaatg
acttcggactacgacggctggtcctccgctatggcaataaacacgcaatccgtcatcggc
gtctccgcgacttttcttcctctgctcgaagcagcgaatacgcgtcgtggatgggcgccg
ggcaaagtcactggcgcggggaatccgcgtgctcgcgacacgaagaagttggcggatgct
ggtgtcgatgctgatgacgaccgactggcacatatcatcactgttgcctccgtggcttcg
tacatgcgctgggtatccgcgggtctcgcgtacaacgctagtaaatctgctgctgcgcat
ctgggtaagatgatggcgacgtttctggcggaatggggggtcagaagcaatattgtttgt
cctgggccgtacccgagtgatatgacggcggatattaagcctgtgtatgggacgagccag
gtgccgcaggggaggatgggcgggttgaatgatattagtgggttgatgctgtttttggtg
gggaaggggggtgcgtatgttaatgggactgcgcagttgacggatggggggagggtggga
gtgtttcctgctacgtattag

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