Bipolaris oryzae: COCMIDRAFT_90446
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Entry
COCMIDRAFT_90446 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K14792
rRNA biogenesis protein RRP5
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bor03009
]
COCMIDRAFT_90446
Ribosome biogenesis [BR:
bor03009
]
Eukaryotic type
90S particles
Other 90S particles
COCMIDRAFT_90446
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
Spt6_S1
HAT_PRP39_C
HAT_PRP39_N
Suf
HAT_Syf1_CNRKL1_N
RNase_II_C_S1
HAT_Syf1_CNRKL1_C
TPR_19
PPR
PPR_2
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
19127686
NCBI-ProteinID:
XP_007686174
JGI:
Cocmi1_90446
UniProt:
W6ZIQ6
LinkDB
All DBs
Position
Unknown
AA seq
1798 aa
AA seq
DB search
MGAVKRKAEQGATPSKKPKSTSSDRSAKRRKSDVDQQSPAKAKLENPAPPTSIFKDEEKK
SFPRGGASVLTPLEHKQIQIKANQDVLFEQSGQKRPGGDDGEGYSDMGSEDDETKSAPKS
KKKMTKKSKKTHESGDKEDVVKVETLSYKKLSPGTIVLGQITDISHQDIVLALPNNLVGY
VPLTAVSDKLNERLEKLLKEDESDKEDGSDKDDFEDVDLRDLFSVGQYLRACITATSSEG
AKARKRLELSIEPKLVNTGLTKRKIPVNGMIQASVVSNEDHGLVMDLGLNDATLKGFLPK
GELGPNLQHSKVQEGAVFMCLVTGLNSDGRIVKLSADHTKAGNLTKGNTLTEAPTIDVFL
PGTAVDLLVTENTPNTITGKILGLIDATADAYHSGATEKATDVSQKHKIGSKVKARVLFT
CPGSDPRKVGVSLLDHVLSLSTRMSGKPKERKPPIDLLPTSTIVESAKVVKVAPSQGAFF
DLGIKDVVGFAHISRLSDDKVDILSEEAGAFKLDSKHKARIVGYNALDGLFQLSLEKKVI
DQPFLRIEDIKAGEVVKGKVHKLFADKSGATAVLVHLADGITGLVQEMHLADVRLQHPER
KFREGLPVTARVLYTEPARHQIHLTLKKSLVNSEVKPWTNYEMISEGATGPGILVSVRRN
GATVQFYNRVKAWLPVAEMSEAFIHDATRHFHSGQVVNVRVLSVDAKERQLLVSCKDPAA
VDTNKEAAFNALNPGGIVKGTVVEKSDESVTLDIGNGVKGILRLGHLTDGSEKKDISTMK
KIRVGGTLEDLVVLTKHGKSKMATVSNKPSLRKDAQASKLAISIEDLQAGETVHGFVRGI
LSDKVFVELGNGISGALFRSQLPEDMAAAPDFGLRKDQSITVRVTHVDVGKGLFWLSMKS
EDEVASAKAAAAPPVKVAEPLVDPVDPKMTSTDDIKFGTLMTVRVRSVKDTQLNVELAVN
VPGRISVSELFEDWDSIPDKKRPTAHFKMNDTIQARVLGRHDPRNFRFLPITSRSSNKTT
TYEMTAKTEEIKSEVDVLSLDKVTTGSSYVAFINNIADRHVWVNISANIRGRIDFFDLTD
DLEKLSDVEKNFPVGSALKVRVKAVDAANGKLDLTAASTVTGKSMSLQDLKVGHVLPARV
TKLHDASIVVQINESIAAPIFMEQLADDYDKAQPKNFVVGDVLRVCVIDIDVPNKKLGLS
ARPSRVLSSSLPVKDPEITDRTQLKVNQVVRGFVKHIANNGVYVRLGPHVEGYVRVSHLS
DEYIKDWKSAFHVDQLVTGKVISNKEDQRNPQLSLKTSVIKTDYVEPLEFATLKIGQIVT
AKVRHVEDYGVFLIVDNSNNVSGLCHISQIADAAVDKEKLKDMYKKDDVVKAKVIKVDPK
SRKVSFTLKYSQVKGEGEGEDEEMEDASDVEQSGDDDSEGGVELDDDVDMRSVRSAESDD
DIELADADSSENESDNDESKATPKGLSTSGFDWTGATLDFDQQKGAADSESEDDAPKKKK
KSKKATIKEDRTGDLDAYGPQSVADYERLLLGQPNSAELWVRYMVFQRELNEIEKARQIA
RRALATINPREEKEKLDVWTALLHLENDFSSDDVINAVFKEACQNNDDREIHERMIKIYI
SSGKIDKADELYQSMMKNKSFTADPKFWLSYAAFLIDVIQPPSPARARALLQRATQSVAA
PQHRYLTQKFAALEFKSPNGDTERGRTIFEGLVDTFAKKGDVWDMYLMLEQSHGEADKVR
DLFERMTKVGKSSRIRGVFKKWVEWENSVGNKKGVEKVKKLEEAWREKKAEEAGKDDE
NT seq
5397 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcggtcaagcggaaagcagagcagggcgccaccccgtccaaaaagcccaagagc
acatccagcgaccgatcagcgaagcggcgcaaatccgatgtcgaccagcaatcgcctgca
aaggcgaagcttgagaaccctgcaccgccaaccagcattttcaaggatgaagagaagaag
tcgtttcccagaggaggcgccagtgtcttgactccgctcgagcacaagcaaattcagatc
aaggcgaatcaggatgttcttttcgagcaatctgggcagaagcgtcctggcggcgacgat
ggcgaaggatacagcgacatgggttccgaggacgacgagacaaagtctgcgcccaagtca
aagaagaaaatgaccaagaagagcaaaaagacacacgagagcggcgacaaggaggatgta
gtcaaggtcgagactcttagttacaagaaattgtcgcctggaaccattgtacttggccag
atcaccgacatttcccaccaagacattgtgcttgccctccccaacaacctagtcggctac
gttcccctcactgccgtgtccgacaaactcaacgagaggctggagaagctcctcaaggaa
gacgagagtgacaaggaagatggaagcgacaaggatgactttgaggatgttgacctcagg
gacctcttctccgtgggtcagtaccttcgtgcatgcatcaccgcaactagcagcgaaggc
gcaaaagcaaggaagcgactcgaactttcaattgagcccaagctggtcaatacgggcctt
acgaagcgcaaaatacctgtcaacggtatgatacaagcgtctgttgtgagcaacgaggac
cacggcctggtcatggatctgggcttgaacgatgccacattaaagggctttctaccaaag
ggcgagcttggcccaaacctacagcattcaaaagtccaagagggtgccgtctttatgtgc
ttggttaccgggctcaactctgacgggcgcatcgtcaagctctctgccgaccacaccaag
gcaggaaacctgactaagggtaatactttgaccgaagcacctaccattgacgtattcctc
ccgggaactgcggtcgaccttctcgttacagaaaacacgccaaatacaatcacgggcaag
attctgggcttgatagatgcgacagcagatgcataccactcaggcgcgactgagaaggcc
accgacgtgtctcaaaagcacaagatcggatccaaagtaaaggcccgtgttttattcaca
tgtcctggctcagatcccaggaaggtcggcgtgtctttactagaccatgtgctttcgttg
tctacgcgcatgtctggaaaacccaaggagcgcaagcctcctatcgacctgctgccaact
tctaccattgttgaaagcgcaaaggttgtcaaggtggcaccaagccaaggtgcatttttc
gatcttggaatcaaagatgttgtcggcttcgcccacatctcgcgactctcagacgacaaa
gtcgatattctctcagaggaggctggtgcattcaaacttgactcgaagcacaaggcaaga
attgttggctacaacgctcttgacggacttttccagttgtcccttgagaagaaggtcatt
gaccaaccctttctccgtattgaggacatcaaagctggtgaagttgtcaagggcaaagtg
cacaagcttttcgcagacaagtctggagcaaccgctgttcttgtccatctggctgatggc
atcactggtctggttcaggagatgcatctcgctgatgtccggttacagcatccagaacgc
aagtttagagaaggactgccggtcacagctcgagtgctttacaccgaacccgcgagacat
caaatacaccttaccctcaagaagtcattggtcaactccgaggtgaagccttggacaaac
tacgaaatgatttcagaaggtgctaccggccctggaattttggtcagtgtccgccggaat
ggtgccaccgtgcaattttacaaccgtgtaaaggcatggcttccagtcgcggaaatgagc
gaagcatttattcatgacgcaacacgacactttcattctgggcaggttgttaacgtgcgc
gtcctctctgttgacgcaaaggaacgtcagctcctagtgtcctgcaaggatcctgctgct
gttgatactaacaaggaagccgcctttaatgctcttaaccccggtggaatcgtcaaggga
acggtcgttgaaaagtctgacgaatcagttactctggacattggcaatggtgtcaagggc
attcttcgccttggtcatctgactgacggatcagagaagaaagacatctcgaccatgaag
aagattcgcgttggtggaactttggaagatctcgtggttcttaccaagcatggcaaatcc
aaaatggcgaccgtatccaacaaacctagtctccgaaaggacgcgcaggcctcaaaactt
gctatcagtattgaggatctgcaagcgggtgagactgtgcatggattcgtgcgcggtatt
ctctcagacaaggtctttgtcgagcttggcaatggcatcagcggtgcactgttcagatcg
cagttaccagaagacatggccgcggcgcccgactttggcctgcgcaaggaccaatccatc
actgtccgagttacgcatgtagatgttggaaaggggctcttttggttatcgatgaagtct
gaggatgaagtggcttcagcaaaggctgctgctgcccctccagtaaaggtagcagagcct
ctagttgaccctgtggatcctaaaatgacatccaccgacgacatcaagtttggtactctg
atgaccgtccgtgtccggtcagtcaaagatacacaactcaacgttgagcttgcagtaaac
gttcccggtcgcatttctgtatcggaactgtttgaagactgggacagcattcccgacaag
aagcgaccaactgcacacttcaagatgaacgataccattcaggctcgggttttgggaaga
cacgatccacgcaatttccgtttcctcccgatcacatctcggtcaagcaacaagacgaca
acatacgaaatgactgcaaagacggaggagatcaagtcagaagtagatgtgttgagcctc
gacaaagttacaaccggctcgtcttacgtcgctttcatcaacaacattgccgaccgccat
gtctgggtgaacatctcagccaatatccgcggacgcatcgacttcttcgacctgactgac
gatcttgagaagctatctgacgttgagaagaactttcccgtgggttctgctctcaaggtc
cgcgtaaaggcagtggatgcagcgaatggaaagctagacttgacagctgcatctacagtg
accggaaaatcaatgtctctccaagacctgaaagtcggtcacgtcctacccgcacgtgtg
accaagctgcacgatgcatcaattgttgtccaaatcaatgaaagcatcgctgcacccatc
tttatggagcagttggcagatgactacgacaaagctcagccgaagaactttgtggttggc
gatgtcttgcgagtgtgcgttattgacattgacgttccaaacaagaaattaggattgtcg
gccagaccttctagagtcctaagctcttcattgccagtcaaggatcccgaaattaccgac
cgtacacagctcaaggtgaaccaagtcgtccgtggcttcgtcaagcatatcgcgaacaat
ggtgtctacgtccgtctgggtcctcatgttgaaggctacgtccgcgtgagtcatctttcg
gacgagtacattaaagactggaagagtgcattccatgtggatcagctcgtgaccggcaag
gtcatctcgaataaggaagatcaacgcaacccacagctgagtttgaagacttcagtcatc
aagacagactacgtcgagcccttggaatttgctactctaaagattggccaaatcgtcact
gccaaggtcagacatgtggaggactatggtgtctttctcattgtcgacaactcgaacaat
gtcagcggtctttgccacatttctcaaatagcagatgctgccgttgataaggagaagctc
aaggatatgtacaaaaaggatgatgtcgtcaaggctaaagtcatcaaggttgaccccaag
tcaaggaaggtcagctttacgttgaagtattcacaggtaaaaggcgaaggcgaaggcgaa
gatgaagagatggaggacgcctcagatgtcgagcaatcgggagacgacgattcggagggg
ggagttgagctcgacgatgatgtcgatatgaggagcgtcaggagcgccgaaagcgatgat
gatatcgagcttgccgatgcagacagctctgaaaacgagtcagataacgacgagtcaaag
gcaaccccgaagggtctcagcacttctggcttcgactggacgggcgctactctcgacttt
gatcagcaaaagggtgcggctgactccgagtccgaagatgatgctccaaagaagaaaaag
aagagcaagaaggccaccatcaaggaggatcgcactggtgaccttgatgcctacggccct
cagtctgtcgcagattacgagcgcttactcctcggacaacctaacagcgccgagctgtgg
gtacgctatatggtgttccagcgtgagctcaacgagattgagaaggcgcgtcagattgcg
cgtcgtgcgctggccaccatcaacccgcgagaggagaaggagaagcttgacgtctggact
gccttgctgcacctggaaaacgacttctccagtgacgacgtaatcaacgccgttttcaag
gaggcatgtcaaaacaatgatgaccgcgaaatccacgagcgcatgatcaagatttacatc
tcatcgggcaagattgataaagcagatgagctctatcagtctatgatgaagaacaagtcg
ttcacagcagacccgaagttctggctttcctacgccgcgtttctcatagacgttatccag
ccaccatctccagctcgggcccgcgcccttctccaacgcgccacacaatctgttgcagcc
cctcaacaccggtatcttactcaaaagtttgccgcgctggaattcaagtcgcccaatggc
gatactgagcgcggccgcaccatcttcgagggtctcgttgacacttttgccaagaaggga
gatgtatgggacatgtatctgatgcttgagcagagccacggcgaagctgacaaggtccgc
gatttgttcgagaggatgaccaaagtgggcaaatcgtcgaggatcaggggcgtgttcaag
aagtgggtagagtgggaaaacagcgtcgggaacaagaagggcgttgagaaggtgaagaag
ctagaggaggcatggagggagaagaaggcggaggaggcgggaaaggatgacgagtaa
DBGET
integrated database retrieval system
