Bipolaris oryzae: COCMIDRAFT_919
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Entry
COCMIDRAFT_919 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12586
exosome complex component RRP43
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_919
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
COCMIDRAFT_919
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
19127970
NCBI-ProteinID:
XP_007682968
JGI:
Cocmi1_919
UniProt:
W6ZSH7
LinkDB
All DBs
Position
Unknown
AA seq
346 aa
AA seq
DB search
MATETRPPPALTFPRPIFAAVSPHPFLQAHLSAEKKKPVRANGRTANEFRTPGVNTGSLT
HCNGSAVVRLGNTSVVCGVRAEILKEEDISGAFEYPKDLAGQDDSPQEEDSEEVEGLRLV
VPNVELSTGSTPSHIPGNAPSTYAQTLITRIRSLIHSTRLLRPSDLRILYKPSTNPEDPD
VEAETQLKGYWVLYLDIFFISIDGNAFDAAWISMLAALRDTLIPHAYYDEEFEGILCSDN
PQEARRLRLQGLPIPSTYAVFEGRKEEDEDVDWVLSDPDAFEEGVCRETVSVVVDCQGRK
KGTKDLVIRRVEKSGGGVVGRELMGSLIKRSIDRWGAVEAVLGGKA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgagacccgtccacctccagctctcacctttccccgccccatcttcgccgct
gtctctccacacccgttcctccaagcgcacctctctgctgagaagaagaagcctgtacgc
gccaacggccgaaccgccaatgagttccgaacaccaggagtaaacactggtagcttgaca
cattgcaatggcagcgcagtcgtgcgcctgggcaacacgagcgtggtttgcggcgtacgt
gcagaaatcttgaaagaggaagacatatcaggcgcctttgaataccccaaagatctggca
ggccaggacgattcaccgcaagaggaagatagtgaggaagtagaaggactgaggctggtg
gttccaaacgtcgagctttctactggaagcacaccctcgcacattccgggcaacgctccc
tcaacatacgcacaaacactcattacgcggatacgatcgctcattcattcaacgcgacta
ctccgcccttcagatctccgtattctatacaaaccctctacaaaccccgaggaccccgat
gtggaagctgaaacacagttgaaggggtactgggtcctgtatttagacatctttttcata
agcattgatggaaatgcgtttgatgcagcctggatatccatgctcgctgctctgcgcgac
actcttataccacacgcatactatgacgaggagtttgaggggatactatgttccgacaat
ccgcaagaagcgcgtcgattgcgattacaaggtctgccgatacccagcacatatgcggtg
tttgagggcaggaaggaagaagatgaagacgtagactgggtactcagtgatcctgatgct
tttgaggaaggagtatgcagagagactgtcagtgtagttgtggattgccagggtaggaag
aagggcacgaaggatttggtgattcgaagagtggagaagagtggtgggggtgtcgttgga
agagagctaatgggcagtttgattaagaggagcattgatcgttggggtgctgtcgaggct
gtgctgggcggcaaagcctga
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