Bipolaris oryzae: COCMIDRAFT_92798
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Entry
COCMIDRAFT_92798 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K18748
protein SSD1
Organism
bor
Bipolaris oryzae
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_92798
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
COCMIDRAFT_92798
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
Motif
Other DBs
NCBI-GeneID:
19128147
NCBI-ProteinID:
XP_007687050
JGI:
Cocmi1_92798
UniProt:
W6Z8T5
LinkDB
All DBs
Position
Unknown
AA seq
1363 aa
AA seq
DB search
MDQQQGQQGPMGPAGRRLHIAHRRSPSELTPLMMEQLAIAQQIEVLQQQQQQIAATHQQY
VNMGMIQPQQQLGNFQMQGQMPSVSPQVNNYQFAQQMPQQQQHLAVPMNAPAQPSAHRRN
QSALPNVGLGPPPAPSSGASGFGDFGAQQGGQGRENVNPRGRGGGGAGGSGHTRRHSLAL
ADAKKAAEQAESKRKTSGFQFPIPGSNEGSSNRDASPGAPGAANDTPSGRGGRGAHGRSQ
SMAVGRGGGGAGRGGPSFSFPATSENPTNQATQQGEFQRRGSQGHGRSQSRNFEGNWRQP
QNNNQQQSTQDNQSQNMGNFNMNQTANAAPFQPGHRSRGSVNQSLGGLGNFQYAGQPQMQ
MQSPQAQLLLQQQMFGQPLNPMQIAHLQALQAAQMQGGLGGSQHAPQMNMQQQQQQQRKT
LFTPYLPQATLPALLGDGQLVAGILRVNKKNRSDAYVTTTDLDADIFICGSKDRNRALEG
DLVAVELLDVDEVWGQKREKEEKKKRKDNADPRGASIAVNDATTQPETGSEGGIRRRGSL
RQRPTQKKNDDVEVEGQSLLLMEEEEINDELKPLYAGHIVAVIERVAGQMFSGSLGLLRP
SSQATKEKQEAERQAREGNTGRTQPERQDKPKIVWFKPTDKRVPLIAIPTEQAPRDFVEK
HQEYADRIFVACIKRWPITSLHPFGTLVEQLGVMGDLKVETDALLRDNNFGPDDFSDAVI
KNVGFEDWSVANDGEEALKNRRDFRGEETFTIDPNGSKELDDAIHFKYLDDGRVEIGVHV
TDIAHFIKANSLVDREAKKRGTAVYLMNRTVNMLPPKLSNDICCLNPGEERYTVSVVFKA
DPASGKVFEDETWIGKSVIKSSGKLSYDEVDSVISGNDDSVSAARAKDIKMLHHISQKFR
QTRFGDRVSDVKALRLMYQLDDENVPVEQNIFDSSPAHECIEELSHLVNATVAKKLAAGL
PEKALLRRQAPPNPRRLMTIAERMGAIGYELNTESSGSLQNSLFEVEDDDLRKGMETLVI
KSMPRAKYFIAGKLPEEQYPHYALNLPRYTHFTNPSRRYADIVVHRQLEAVLSNGAIEFT
EDIEALAKTAEMCNTKKDSAHSAQEQSVHIEACRKMDKVRQESGGDLIAEGIVLCVYESA
FDVLIPEWGFEKRVHCDQLPLKKAEFDKNKRLLELYWEKGVPSSNYIPEDERPKHGSLRS
ANAAAAAREAEAAKQRAREQEEAQRRQMDTGTMSTNEEAALFDDDDDDDDDDDANDLNSN
MAGVSLNPDRPTQSMPPSPTRRDLPGAPHRVNSDSKIAQSAGEAAENKLTNKEKYLSWFT
LREENGDYIQDVREMTRVPVILKTDLTKSPPCLTIRSLNPYAL
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacaacaaggccagcagggccccatgggtcccgccggccgccgtctgcacatt
gcgcatcgccgcagtccctcagagctgacgccactgatgatggaacaactagccattgca
cagcagattgaagtcctccagcagcaacagcagcagatcgccgcaacacaccagcaatat
gtcaacatgggtatgatccagccacagcagcagctgggcaactttcagatgcagggccag
atgcccagtgtctctccccaggtcaacaactaccaatttgcccagcagatgccccagcag
caacagcatctcgctgttccaatgaacgctcccgcccagccctccgctcaccgccgcaac
cagtccgccctacccaacgttggtctgggtcccccacctgcaccctcttccggcgcctct
ggattcggcgactttggtgcacaacagggtggtcaaggcagagagaatgtaaaccctcgt
ggccgcggcggtggcggtgctggtggctctggtcacacccgtcgccactcactcgctctc
gcagatgccaagaaggctgctgagcaagccgaatcgaagcggaagacttcgggcttccag
ttccctatcccaggctcaaacgagggcagctccaaccgtgatgcaagccctggcgcacct
ggtgctgccaacgacactccttcaggccgaggtggacgaggcgcccacggccgtagccag
agcatggctgtcggacgtggtggtggaggcgctggccgaggcggaccatctttctccttc
ccagctacaagtgagaatcctaccaaccaggctactcagcagggcgagttccagcgtcgt
ggcagccaaggtcatggccgcagccaatcacgcaactttgagggcaactggagacaaccc
cagaacaacaaccagcagcagtctactcaagacaaccagtcccagaacatgggcaacttc
aacatgaatcaaaccgccaatgccgctcctttccagcccggtcaccgcagtcgtggatcg
gtcaaccagtcccttggtggtcttggtaacttccagtatgctggccagccacagatgcag
atgcagtcacctcaggcccagctcctgctgcaacaacagatgttcggtcaaccactgaac
cctatgcagattgctcacttgcaggcccttcaggctgcccagatgcaaggtggccttggc
ggcagccagcatgctcctcagatgaacatgcagcaacaacagcagcagcaacgcaagaca
ctattcactccttaccttccacaggcaaccctgcctgcccttctcggcgacggccaactc
gttgccggtattctccgcgtcaacaagaagaaccgcagcgatgcctatgtgaccactact
gacctagatgctgacattttcatctgtggtagtaaagacaggaaccgagctctcgaagga
gatctcgttgctgttgaacttcttgacgttgacgaagtgtggggacagaaacgcgaaaaa
gaagagaagaagaagcgcaaggacaacgctgaccctcgcggtgctagtattgccgtcaac
gatgccaccacgcaacctgaaactggctctgagggtggtatccgtcgacgtggcagtctt
cgccagcgacccacacagaagaagaatgatgatgttgaagtcgagggacaaagcttgctc
ctcatggaggaggaggaaatcaacgatgagctcaagcctctgtatgcaggtcacattgtt
gctgtcatcgagcgtgtcgcaggacaaatgttctctggttctctcggactcctccgtccc
agcagccaagctacaaaggaaaaacaggaagccgagcgccaagctcgcgaaggcaacact
ggccgaactcaaccagagcgccaagacaaacccaagattgtctggttcaagcctacagac
aagcgtgtgcccttgattgctatccctaccgaacaagcaccacgggactttgtcgagaag
caccaggaatacgctgaccgcatttttgtggcatgcattaagcgatggcccattacatcg
ctgcatccctttggtacccttgttgagcagcttggtgtcatgggcgaccttaaggtggaa
accgatgccctcctgcgcgacaacaacttcggcccagatgacttctctgacgccgttatc
aagaacgttggcttcgaggactggtcggtcgccaacgacggcgaagaggctttgaagaac
cgccgcgacttcaggggtgaggagacattcaccatcgaccccaacggcagcaaggagctt
gatgatgctatccacttcaagtatctcgatgacggccgcgtcgagattggtgttcacgtg
accgacattgcccactttatcaaggccaactcacttgttgaccgtgaggccaagaagcgc
ggaactgccgtgtaccttatgaaccgcacagtcaacatgctgccccctaagctgtccaac
gacatctgctgccttaacccaggcgaggagcgctacactgtcagtgttgtcttcaaggcc
gatccggcttctggcaaggtctttgaggatgagacttggattggcaagtctgtgatcaag
agctctggaaagctgtcgtatgacgaggtcgactccgttatcagcggtaacgacgattca
gtctcggcagcccgtgctaaggacatcaagatgctgcatcacatctcgcaaaagttccgc
cagactcgctttggcgatcgcgtttccgatgtcaaggctctgcgtctaatgtaccaattg
gacgacgagaacgttcctgtcgagcagaacatcttcgactcttctcctgcgcacgaatgc
attgaagagctcagccacctcgtcaacgccacagttgcgaagaaacttgcggcaggtctg
ccagagaaggctcttctgcgccgccaagcacctcccaacccccgccgattgatgacaatt
gcggagcgcatgggtgccattggttacgaactcaacacagagagcagcggttctcttcag
aacagcttgttcgaggttgaggatgacgatctccgaaagggtatggagactttggtcatc
aagtcgatgccccgtgccaagtactttatcgcgggcaagctacctgaggaacagtatccc
cactacgcccttaacctccccaggtacactcacttcaccaacccatcccgccgctatgcc
gatatcgtcgtgcaccgccagttggaggctgttctgtcaaacggcgccattgagttcact
gaagacattgaggctctcgccaagactgctgaaatgtgcaacaccaagaaggactcggct
cactctgcccaagagcagagcgttcacattgaagcctgccgcaagatggacaaggtcagg
caggagagtggcggtgatctcatcgccgaaggtatcgtcctttgcgtgtacgagtctgct
ttcgacgtgctcattcccgagtggggcttcgagaagcgcgtccactgtgatcagcttcct
ctcaagaaggccgagttcgacaagaacaagcgtttgcttgagctctactgggagaagggt
gtcccatcatccaactacatcccagaggacgagagacccaagcatggctcactccgttcg
gccaatgctgccgcagctgcgcgtgaggctgaagcggcgaagcagcgtgcaagggaacaa
gaagaggctcagcgcaggcaaatggacaccggcaccatgtccaccaatgaggaggcagcg
ctgtttgacgacgacgacgacgacgatgatgatgatgatgccaacgacctcaactcgaac
atggccggtgtgtcgctgaaccccgaccgcccaacccagagcatgcccccgtcgcccacc
aggcgcgatcttcctggtgctcctcaccgcgtcaactcggattcgaagattgctcaaagt
gccggcgaggctgcggagaacaagttgaccaacaaggagaagtacctgagctggttcact
ttgcgcgaggagaacggcgactacatccaggatgtacgggagatgacgagggttccagtc
attcttaagacggatctgaccaagagtcctccttgcttgaccatccgatccctaaaccca
tatgccctctag
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integrated database retrieval system
