Bipolaris oryzae: COCMIDRAFT_93013
Help
Entry
COCMIDRAFT_93013 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_93013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_93013
03036 Chromosome and associated proteins [BR:
bor03036
]
COCMIDRAFT_93013
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCMIDRAFT_93013
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
COCMIDRAFT_93013
mRNA degradation factors
5'-3' decay
Decapping complex
COCMIDRAFT_93013
Chromosome and associated proteins [BR:
bor03036
]
Eukaryotic type
Gene silencing
piRNA pathway
COCMIDRAFT_93013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
19128184
NCBI-ProteinID:
XP_007687115
JGI:
Cocmi1_93013
UniProt:
W6Z9A1
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MTSEITNQLAATQLSDATPSGEANWKAGLNAPVKDARPQTEDVTATKGLEFEDFFIKREL
MMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKSPKTQA
LILVPTRELALQTSQVCKQLGKHLGINVMVSTGGTGLKDDIIRLNDPVHIIVGTPGRILD
LAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQVMLFSATFPIVVKSFK
DKHMNSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFNKLQINQSIIFCNSTNRVE
LLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVIN
FDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRIEQELGTEIQPIPQVIEKNL
YVYESPESIPRPMSNQPRAPAQIQQQEQEGAARGNPNSRGGFRGGRGGGGGFQGQRRGPP
QNQQNRQQNGQNTQRNPRPQPANPPQAS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgacttcagaaatcacgaaccaactagcggcaacacagctgagcgatgccacaccgtca
ggagaggccaattggaaggctggactgaacgcgcccgtaaaggatgcgcgaccacaaaca
gaggatgttactgctactaagggacttgaattcgaagacttctttatcaagcgtgagctg
atgatgggcatcttcgaggctggctttgagaagccgtcacccattcaagaagagactatc
cctgtagcacttaccggccgagacatccttgcacgagcgaagaacggtaccggaaagact
gccgcctttgttatcccaaccctcgagcgcgtaaaccccaagagcccaaagacacaagcc
ctcatcctcgtacctacccgagaactcgccctacaaacctcccaggtatgcaagcagctg
ggaaaacaccttggaatcaacgtcatggtctcgaccggtggtacgggcctcaaagacgat
atcatacgattaaacgatcctgttcacattattgttggaacaccaggtaggattttggat
ttggctggcaagggcgtagcagacctttcagcttgccagacctttgtcatggatgaggcc
gacaagcttctttcccctgagttcaccccggttgtggagcagctgcttggcttccacccc
aaggacagacaggtcatgcttttcagtgccacgtttcccattgttgtcaagagctttaag
gacaagcacatgaactccccatacgagattaacctgatggacgaactcacacttcgcggt
attacgcagtactacgctttcgttgaagagaagcagaaggtccactgcttgaacacgctc
ttcaacaagctccagattaaccagtccatcatcttctgtaactccacgaaccgagtcgag
ctcctcgctaagaagatcactgaactcggctactcgtgtttctactcgcatgctcgcatg
ctccagcacaaccgcaaccgcgttttccacgacttccgtaatggtgtatgccgaaacctt
gtttgctccgacttgcttacccgtggtatcgatatccaggcagtcaacgtcgtcatcaac
tttgactttcccaagaacgccgagacttatctgcaccgtattggtcgttctggtcgtttt
ggacaccttggtctggctattaacctgatcaactgggaagaccgcttcaacctgtatagg
attgaacaagagcttggtactgagattcagcccattcctcaggtcattgagaagaacctc
tacgtttatgaatcgcccgagtcgatccctcgtcccatgtccaaccagccacgtgctcct
gctcagattcagcaacaagagcaggaaggtgctgcacgcggaaaccctaattcccgtggc
ggcttccgcggtggacgcggcggtggcggtggattccagggacaacgccgaggacctcca
cagaaccagcaaaaccgccaacagaatggccagaacactcagcggaatcctaggccgcag
cctgcaaacccaccgcaggcctcgtaa
DBGET
integrated database retrieval system
