Bipolaris oryzae: COCMIDRAFT_93021
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Entry
COCMIDRAFT_93021 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
bor
Bipolaris oryzae
Pathway
bor03440
Homologous recombination
bor03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
COCMIDRAFT_93021
03460 Fanconi anemia pathway
COCMIDRAFT_93021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bor03032
]
COCMIDRAFT_93021
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_93021
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
COCMIDRAFT_93021
DNA replication proteins [BR:
bor03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
COCMIDRAFT_93021
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
COCMIDRAFT_93021
Bloom's syndrome complex (BTR)
COCMIDRAFT_93021
FA (Fanconi anemia) pathway
COCMIDRAFT_93021
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
RQC
HRDC
ResIII
Motif
Other DBs
NCBI-GeneID:
19128189
NCBI-ProteinID:
XP_007687136
JGI:
Cocmi1_93021
UniProt:
W6Z8R7
LinkDB
All DBs
Position
Unknown
AA seq
1788 aa
AA seq
DB search
MPRNNLSKHLQWLVNEKPFIPPASSLVAYEAGAEPTSSATISLQHSSHSDTQTAYNEPQP
ASVPAPPSAPQTARPVLPRSLAPTRPIDIHNPPEAEGTSSDMARLRATPASGKPRLIVAG
LPDHVSYSASPSRARNEKNTTAEPGRANSERTRDPPTTSRTISGHMEVPASQYGTAGMSR
MEPIDVDSIDLTGDDAIPSSPVPMRTPKGRKRKSDEFEADLRHAKSPRPIRADPTLAPEP
DDDDDEFPDIEDIVMAPDSPPPPYSIVAGGAKSSPEQAADAEDDDMEAMLQIEEEERRIA
EAEQAASTQPRKRKPLSRVPSENAPARKMGKQTRSPAPSKTRPCAAEVAVPKSERMRAPT
TKRIEHAVMDSEDEDFGAIDEMDIDTQARTKSPTPPRKRLREKTPVSNPAGPASQTQLPI
RSPVKALRSPSPYQPEQDSIPTPAKSQSPKKNTKSAPLPVSAPIKPIPSSSELSKEKKNA
IKSTIDAFLKTEGQRLQSHLNTASLAWEDARAAFVAHISEHGIPDPSEQERMGRARSRKD
AVEQLIVLKTKHSDLVNERQKVKQKLEDDLDMGQFDAADGETLSRLFKMIEDIQIQMYYL
LDLAAIKQQPKSVVKAESKSSRNVVIQSTQTSPVRPSFDDSKESGPNRIPQTQYPKHGDT
VVEEVFTPTRRIRFAEEQVAASPLPPLDLGIRSRTENGATGMHNHVPKDRSHRIPETPEH
RRSPKKSKPATHHDMPDDFEDMEFEEDESLFTHHMGELHQPIEVSDDDEFGADDDEFLHE
INNIENQVPGNFNWKGERTGALPSTNTREVFREASPNKAAPKQNQQASPKKPQLNMPAKN
HPGMNFPWSQDLRAALIRRFGLRGFRPGQLETINTTLAGKHCFVLMPTGGGKSLCYQLPS
VIASGKTHGVTLVVSPLLSLMEDQVEACRQRFGMQAFLINGESTAAQKKMIMDGLRERNP
QQFVQILYVTPEMLSKNQRMINAFQQLHSGGNLARIVIDEAHCVSQWGHDFRPDYKALGD
VVRQFPGVPVLALTATATKLVRSDVVSNLGIQGCQEFSQSFNRPNLSYEVLPKAKGIINN
IADLIKERYVGKSGIIYCLSRKSCEQVAQKLSEMGIRAYHYHAGMDSTDRSDVQRKWQKN
EYHVIVATIAFGMGIDKADVRYVIHHSLPKSLEGYYQETGRAGRDGKRSECYLYYQYADS
RILRKMIDEGEGSREQKQRLSDMLRTVIQYCENKADCRRAQVLGYFSEAFDPSKCNSTCD
NCRSDATFITKDLTEYAAMAIKLVSQVHEDNVTMHQCVDAFRGAGGAKIKSAGLEEYGWG
YGKDLERGDNERIFQQLLDAGDLKEKSKVNKVGFATSYLHPASTRNDYETKRKQLKLQVR
SSPHKASAKPSSKAPAAKKAKKQQTQFPSTNVDSPVHGNKQKIRSFAYNQDDDDDDEDVF
DAPRHPTRKPANRSFQADGFVGDNDGFAPVREARPLKATKAKKLGTPITTDQRTAELTEL
QSDVLRDFMTGAKRMRTSIQERKGHREAIFTDTVLREMGLDLPRNLDEMKMIPGIRPEMV
DRYGKSFLKLINNTRNFYGDDTPVPRNPQLRNKQAQSSRTVYEIDDDDNDDNDDDEEVDD
QNHRLVVDLCGDDDDDDVEEVDVPNAEEFGDDSSYGDLDYDDDGDDDDGEVHTSHHFSHA
PNPEVAEFNNRYTQLGGRAAPVSKAAAKAPAARSGYKKKGTFKKRTSGNFGNNKNFGGVK
KRAARGSSSRASAGASSRPRGGGGGGVSRGGGGGPTGGGWGSIMAMPT
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atgcctcggaacaatcttagtaaacacctccagtggttggttaacgagaagccatttatt
cctcccgcatcatcgctcgtggcatacgaagccggcgctgagcctacgagttcggcgaca
atctcactgcaacattcttcgcactcagacacgcagacggcatacaatgaaccccaacct
gcctccgtgccagcgcccccatcagcacctcaaaccgctagacccgtcctaccccgcagt
ctcgctccaacgaggccaatcgatatacacaaccctccagaggctgagggtacgagctcg
gatatggcaagactgagggctacgccggcaagcgggaaacccagactcattgtagcgggg
ttaccagatcatgtatcatactcggcgtccccaagcagggcaaggaatgagaagaacacc
acagcagagccgggaagggccaattcggaacgcactcgagatccaccgacaacttcgagg
acgatcagcggacacatggaagtacctgcttcacaatatggcactgctggaatgagtcgc
atggagcctattgatgttgactccattgaccttactggagatgatgcgattccctcttcg
ccagttccaatgcgcacccccaaaggacgaaaacggaagagcgacgagttcgaggcagac
ctccggcacgccaagtctcccaggccgattcgagcagaccctacgctcgccccagagccc
gacgacgacgatgacgagtttcctgatatcgaggacattgtcatggccccggatagtccg
cctccaccatattcgattgtcgcagggggtgcaaagtcctcaccagagcaagctgcggat
gctgaggacgacgatatggaggcaatgttacaaatagaagaggaggagcgacggatagca
gaggcagagcaggcggcgtctacacaaccgcgcaaacgcaaaccgttaagccgtgtgcct
tcagaaaatgctccagcccgcaaaatggggaagcagactcgtagccctgcgcctagcaag
accaggccttgcgcagccgaagttgcggtacctaaatcggaacgtatgcgcgcgcctact
actaagagaattgagcatgcggtgatggactctgaagacgaagactttggtgcgatagat
gagatggacattgacactcaagctcggacaaaatcacccacgcctccgagaaaaaggcta
cgtgaaaagacgccagtgtcaaatccagctgggcctgcgagccagacacagctacccata
cgctctccagtgaaggccttgcgaagtcctagtccataccaacctgagcaagactccatt
cctaccccagcgaagtcgcaatcccctaagaaaaataccaaatctgcacctctaccagta
tccgcgcccatcaagcctatcccaagctcgtcagaattgtcaaaggaaaagaagaatgcc
atcaaaagcactatcgatgcattcttgaaaacagagggtcaaaggttgcaaagccatctc
aacacggcgagtttggcatgggaagatgcccgtgctgcctttgttgcccatatctccgag
catggtatacctgaccctagcgaacaagaaaggatgggacgcgctcgctcacggaaggat
gcggtagagcagttgatagtcttgaagaccaagcatagtgaccttgtgaacgagcggcaa
aaggtgaagcaaaaacttgaagacgacttggacatgggtcagtttgacgcagcagacggt
gaaactctcagcagactcttcaagatgatcgaggacatccagatccaaatgtattacctg
ctggatctggcggccatcaagcagcaacccaagtctgtcgtaaaggcagagtcgaagagc
agccgcaacgtggttatccagtcaactcaaacaagcccagtgcgaccatcatttgatgat
tcaaaggaatcagggccaaatcggatccctcaaacacagtaccctaagcacggcgacact
gttgttgaagaagtgtttacaccgactcgtcgcatacgattcgctgaggaacaggtggct
gcctctccgctaccccctctagatcttggtattcgttcccgcactgaaaacggtgcgaca
ggaatgcacaaccacgtgccaaaagatcgatctcaccgcatacctgagacgccagaacac
cggcgttctccgaaaaagtcaaagccagcaacccatcatgatatgcctgatgacttcgaa
gacatggaatttgaggaagacgagagcctgtttactcatcacatgggtgagctccatcaa
cccattgaggtaagtgacgatgacgagtttggcgcggacgacgatgaattcctccacgaa
atcaacaacatcgagaatcaggtaccaggcaacttcaattggaaaggtgaacggacagga
gccctcccgtcaacgaacactcgcgaggtattccgtgaggcttccccgaacaaagccgcg
ccaaaacagaatcaacaagcatcaccgaagaagccgcaactgaacatgccggccaagaat
caccccggaatgaactttccttggtcccaagatctgagagcggcactcattcgtcggttc
ggtttgagaggtttccggcctgggcaattggagactattaacaccaccctagcaggtaaa
cactgctttgtgctgatgcctaccggaggaggaaagtcgctctgctaccagcttccctcg
gttatcgcttcaggcaagacacatggggttaccctagttgtttctccgctattgagtttg
atggaagaccaagtcgaggcttgcagacagcgtttcggcatgcaggcattcctcattaat
ggagaatcaaccgcagctcagaagaaaatgatcatggacggcttacgcgaaaggaatcct
cagcagttcgtccagatactctacgtgacacccgagatgcttagcaaaaaccagaggatg
atcaacgctttccagcaattgcattctgggggcaaccttgccaggattgtcatcgacgag
gcacattgtgtcagccaatggggtcatgatttccgaccagactacaaagcacttggagac
gttgttcgacaatttcccggagttccggtgcttgcgctgactgcaactgctaccaaactt
gtccgttccgatgtggtatccaatcttggtatccaaggttgccaggaattctcccaaagc
ttcaatcgccccaatctgtcctatgaagtgttaccgaaagcaaaaggcattatcaacaat
atcgcggatttgatcaaggagcgatatgtcggaaagtctggtattatctactgcctctca
cggaagagctgcgagcaagtagcccaaaagctatctgagatgggtatccgtgcctaccat
taccatgccggaatggactcgaccgatcggtctgacgtccaacgcaaatggcagaagaac
gagtatcatgtcatcgtggccacaatcgcctttggtatgggtattgacaaagccgatgta
cgatatgtcattcaccactcgctaccaaagagtttggaaggctattatcaagagactgga
cgtgctggtcgtgatggtaagcgctcagagtgctacctgtactaccagtatgcagactcg
aggatcttgcgcaagatgattgatgagggcgagggcagcagagaacagaagcaacgacta
agcgacatgctgcgaactgtgattcaatactgcgagaacaaagccgactgtcgacgcgct
caagtgctcggatactttagtgaagcgttcgatccctcaaagtgcaactcgacatgtgac
aactgccggtcggatgccacgttcattacaaaggaccttaccgaatacgctgccatggcc
attaagcttgtcagccaggttcatgaggacaatgtcacaatgcaccaatgcgtagatgcc
ttccgtggtgctggcggtgccaagatcaagagtgctggattggaagaatatggatggggc
tacggtaaggacctagaaaggggtgacaatgagcgcatctttcaacaactgctagacgct
ggtgatcttaaagagaagagcaaggtgaacaaggttggctttgcgaccagctacctacac
cctgcttcgacacgcaacgactacgaaactaagcggaagcagctgaagttgcaagtacgc
tcctcaccacacaaagcatctgcgaagccatcttcaaaagcgcctgctgcgaagaaggcg
aagaaacagcaaacacagttcccatcaaccaatgtcgattctcctgtgcatgggaataag
caaaagataaggtcatttgcttacaaccaggatgacgacgacgatgatgaagatgtcttt
gatgcaccacgtcatcctactcgcaaacccgccaatcgtagtttccaagccgacggtttc
gttggcgacaatgatggctttgcaccagtacgtgaggctaggccattaaaagcaacgaaa
gcgaaaaaacttggaactcccatcactacagaccagaggactgccgagctcactgagctg
caaagcgatgtcttgagagatttcatgaccggggctaagaggatgagaacaagcatacaa
gaaagaaagggtcaccgcgaggccatcttcacagatacggtgcttcgtgaaatgggtctt
gatctgccacgaaatctcgacgaaatgaagatgataccaggcatccgacccgagatggta
gatcgttacggcaagtcattcttgaagttgatcaacaatacgaggaacttttacggagac
gacacaccggttcctcgcaatccccagcttcgcaacaagcaagctcaaagctctcggacc
gtctatgagattgacgatgatgacaatgatgataacgacgatgacgaggaagtggatgac
cagaaccaccgacttgttgtagacctttgcggtgacgacgacgatgatgatgtagaggaa
gtagatgtccctaacgccgaagagttcggcgacgactcatcctacggcgatctcgattac
gacgatgacggcgacgacgacgatggcgaagtacacacaagtcatcacttcagccacgct
ccaaacccagaggttgcagaattcaacaaccgatacacgcagctgggcgggagagcagct
cccgtatccaaggctgcagccaaagcaccggcggcaagatcggggtacaagaagaagggg
acattcaagaagaggacatcgggaaactttggtaataacaagaactttggcggggtcaag
aagcgtgcggctagggggtctagcagtagggcttctgcaggggccagtagtcggcccagg
ggtggaggtggaggaggtgttagcagaggcggaggcggggggccgacaggtggtggatgg
ggatccatcatggccatgcctacctga
DBGET
integrated database retrieval system
