Bipolaris oryzae: COCMIDRAFT_93490
Help
Entry
COCMIDRAFT_93490 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
bor
Bipolaris oryzae
Pathway
bor03013
Nucleocytoplasmic transport
bor03015
mRNA surveillance pathway
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_93490
09122 Translation
03013 Nucleocytoplasmic transport
COCMIDRAFT_93490
03015 mRNA surveillance pathway
COCMIDRAFT_93490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_93490
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_93490
03009 Ribosome biogenesis [BR:
bor03009
]
COCMIDRAFT_93490
03012 Translation factors [BR:
bor03012
]
COCMIDRAFT_93490
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCMIDRAFT_93490
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
COCMIDRAFT_93490
mRNA cycle factors
Stress granule specific factors
COCMIDRAFT_93490
Spliceosome [BR:
bor03041
]
Complex C
Other components
EJC/TREX
COCMIDRAFT_93490
Ribosome biogenesis [BR:
bor03009
]
Eukaryotic type
90S particles
Helicases
COCMIDRAFT_93490
Translation factors [BR:
bor03012
]
Eukaryotic type
Initiation factors
eIF-4
COCMIDRAFT_93490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
Flavi_DEAD
TniB
AAA_22
UvrD-helicase
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
19128276
NCBI-ProteinID:
XP_007687315
JGI:
Cocmi1_93490
UniProt:
W6Z8X2
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MADGIDRNADDKMEFSTSKEVTVAPTFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVC
KGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQQVIMGLGDYM
NVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELL
NRGFREQIYDVYRYLPPATQVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQ
YFIAIEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQ
RERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGR
KGVAINFVTQDDVRILRDIELYYSTQIDEMPMNVADLLS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcagacggaatcgaccgaaatgccgatgacaagatggagttctccacctccaaggag
gtcacagttgcgccgaccttcgaggctatgcacctgaaagagaacctgctgcgcggtatc
tacgcctacggatacgagtcgccttcagctgtgcagtcgcgtgctattgtgcaggtctgc
aagggacgcgacaccatcgcccaagcccagtctggaacgggaaagacagcgaccttttcc
atttccatccttcaggttatcgacacggctgtccgagagacgcaagcactcgtactgtca
cccacgcgcgagttggcaacccagatccagcaggtcatcatgggtctcggcgactacatg
aacgtgcaatgccatgcctgtatcggaggcactaacgttggcgaggatattcgcaagctc
gactacggtcagcacgtagtctctggaacacctggacgcgtcgctgatatgattcgccgc
cgcaacctccgcacgcgcaacatcaagatgcttgttctcgatgaagccgacgagcttctc
aaccgcggtttccgtgagcaaatctacgacgtctaccgctacctcccacctgcgactcag
gttgtggttgtttccgccacccttccatacgatgtgcttgagatgacgaccaagttcatg
accgaccccgtacgcattctagtcaagcgtgacgaattgacactagaaggccttaagcaa
tactttatcgccatcgaaaaggaagagtggaagttcgatactctctgcgatctctacgat
acactcaccatcacacaagcggtcatcttctgcaacacacgccgcaaagtcgactggctc
accgacaagatgcgtgaagccaattttactgtttcctccatgcacggagatatgccacaa
agggaacgagacagtattatgcaagacttccgtcaggccaactcccgcgtgctcatttcc
accgatgtctgggctcgtggtatcgacgtacaacaggtgtcgctcgtgatcaactacgac
cttccatcaaatcgtgaaaactacattcacaggattggtcgaagcggtcgattcggacgt
aagggtgtggccatcaacttcgttactcaggatgacgtccgcatcctccgtgacattgag
ttgtactactcgactcagattgatgagatgcctatgaacgttgccgaccttctctcgtag
DBGET
integrated database retrieval system
